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Zeller Group
metaG_course
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8211344b
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8211344b
authored
5 years ago
by
Alessio Milanese
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# Practical: Quality control and read trimming
Objective of the practical:
-
Familiarise with fastq files, how to look at them and what they represents;
-
Learn how to understand if the reads in your files are of good quality;
-
Learn how to remove and trim low quality reads.
Required tools:
-
[
trimmomatic
](
http://www.usadellab.org/cms/?page=trimmomatic
)
(
install
with
[
conda
](
https://anaconda.org/bioconda/trimmomatic
)
)
-
[
FastQC
](
https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
)
(
install
with
[
conda
](
https://anaconda.org/bioconda/fastqc
)
)
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