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Mar 23, 2025
- Bump version 0.9.12 -> 0.9.13 · f2c20331
  Elena Matveishina authored 1 week ago
  
  0.9.13
  
  f2c20331
- fixing gapfill_transport_r (random, order dependent transport gap-filling · 3f6c5376
  Elena Matveishina authored 1 week ago
  
  3f6c5376
Mar 20, 2025
- Bump version 0.9.11 -> 0.9.12 · ee5586e5
  Elena Matveishina authored 1 week ago
  
  0.9.12
  
  ee5586e5
- adding global pathways and cofactors · 3e4a0d09
  Elena Matveishina authored 1 week ago
  
  3e4a0d09
Mar 18, 2025
- Bump version 0.9.10 -> 0.9.11 · 163a8498
  Bartosz Jan Bartmanski authored 1 week ago
  
  0.9.11
  
  163a8498
- Merge branch 'development' · f7423af5
  Bartosz Jan Bartmanski authored 1 week ago
  
  f7423af5
- Fix to quickdiff · ec17d890
  Bartosz Bartmanski authored 1 week ago
  
  ec17d890
- Added missing r-string in conversion.py · 64be89f5
  Bartosz Bartmanski authored 1 week ago
  
  64be89f5
- Bump version 0.9.9 -> 0.9.10 · 333dabe6
  Bartosz Jan Bartmanski authored 1 week ago
  
  0.9.10
  
  333dabe6
- Added quickdiff option in cli. · 0e70c5e8
  Bartosz Bartmanski authored 1 week ago
  
  0e70c5e8
- Bump version 0.9.8 -> 0.9.9 · bab48a35
  Elena Matveishina authored 1 week ago
  
  0.9.9
  
  bab48a35
- allow rewriting supermodel and change name of write_metabolite_production_output · bb3a2846
  Elena Matveishina authored 1 week ago
  
  bb3a2846
Mar 17, 2025
- Bump version 0.9.7 -> 0.9.8 · a2af6a68
  Elena Matveishina authored 2 weeks ago
  
  0.9.8
  
  a2af6a68
- fix flux threshold · 54a38ba0
  Elena Matveishina authored 2 weeks ago
  
  54a38ba0
- Bump version 0.9.6 -> 0.9.7 · a3e065a2
  Elena Matveishina authored 2 weeks ago
  
  0.9.7
  
  a3e065a2
- renamed calc_dist_for_synt_path · 72709973
  Elena Matveishina authored 2 weeks ago
  
  72709973
Mar 13, 2025
- Bump version 0.9.5 -> 0.9.6 · 410a2a2b
  Elena Matveishina authored 2 weeks ago
  
  0.9.6
  
  410a2a2b
- add confidence plot to the output plots · f6b7c6a8
  Elena Matveishina authored 2 weeks ago
  
  f6b7c6a8
- Bump version 0.9.4 -> 0.9.5 · aa7c0887
  Elena Matveishina authored 2 weeks ago
  
  0.9.5
  
  aa7c0887
- fix scipy version for python 3.9 · 64e2257d
  Elena Matveishina authored 2 weeks ago
  
  64e2257d
- Bump version 0.9.3 -> 0.9.4 · f7790c17
  Elena Matveishina authored 2 weeks ago
  
  0.9.4
  
  f7790c17
- change name for all confidence comparison method and temproray fix for clustering with scipy v 1.14 · 87b61185
  Elena Matveishina authored 2 weeks ago
  
  87b61185
Mar 12, 2025
- Bump version 0.9.2 -> 0.9.3 · 33d3bb8e
  Elena Matveishina authored 2 weeks ago
  
  0.9.3
  
  33d3bb8e
- fix table_reactions_confidence usage · e3a7eb9c
  Elena Matveishina authored 2 weeks ago
  
  e3a7eb9c
- Bump version 0.9.1 -> 0.9.2 · c2d33a59
  Bartosz Jan Bartmanski authored 2 weeks ago
  
  0.9.2
  
  c2d33a59
- Merge branch 'development' · 583b4ec9
  Bartosz Jan Bartmanski authored 2 weeks ago
  
  583b4ec9
- Fixed issue with model caching. Added uv lockfile. · dc2d3c1b
  Bartosz Bartmanski authored 2 weeks ago
  
  dc2d3c1b
Mar 05, 2025
- Bump version 0.9.0 -> 0.9.1 · d85db383
  Elena Matveishina authored 3 weeks ago
  
  0.9.1
  
  d85db383
- adding some print statments and change some naming · ec58a816
  Elena Matveishina authored 3 weeks ago
  
  ec58a816
- Merge branch 'development' · 42dcf8bb
  Bartosz Jan Bartmanski authored 3 weeks ago
  
  42dcf8bb
- Added raw strings in dbs.py to prevent syntax warnings. · 29df1f38
  Bartosz Bartmanski authored 3 weeks ago
  
  29df1f38
- Updated gitignore. · f01db9f6
  Bartosz Jan Bartmanski authored 3 weeks ago
  
  f01db9f6
Jan 20, 2025
- Bump version 0.8.9 -> 0.9.0 · fffb2579
  Elena Matveishina authored 2 months ago
  
  0.9.0
  
  fffb2579
- Added note on incompatibilities with respect to current version. · acaae0ef
  Elena Matveishina authored 2 months ago
  
  acaae0ef
- windows fix and json saving · 854007da
  Elena Matveishina authored 2 months ago
  
  854007da
Jan 16, 2025
- Bump version 0.8.8 -> 0.8.9 · 13dfe232
  Elena Matveishina authored 2 months ago
  
  0.8.9
  
  13dfe232
- change color palette for confidence to orange and yellow reactions/gprs and... · 35b58dc0
  Elena Matveishina authored 2 months ago
  
  change color palette for confidence to orange and yellow reactions/gprs and fixing single model analysis problem
  35b58dc0
Nov 20, 2024
- change color palette for confidence to grey · bd2d546f
  Elena Matveishina authored 4 months ago
  
  bd2d546f
Sep 04, 2024
- Bump version 0.8.7 -> 0.8.8 · 2c5b9386
  Elena Matveishina authored 6 months ago
  
  0.8.8
  
  2c5b9386
Aug 30, 2024
- fixing text in svg images and adding dpi for png · 18143282
  Elena Matveishina authored 7 months ago
  
  18143282