Skip to content
Snippets Groups Projects
Select Git revision
  • main default protected
  • test
  • with_python
3 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.027Dec2628Oct16159827Sep330Aug2826222127Oct191817161514131174330Sep292827Testing things with python and jupyter.with_pythonwith_pythonAdded missing files for markdown version of Visualization_of_16S_results_2022 notebook.testtestTidied up the 16S analysis.Added nanoclust output data.Finished improving practicals' code.Testing my version of analysis.Updated BA metadata file, hyperlink change in .md file, updates to analysis scriptmainmainadded metadata files for HD and BA sites for 2024Update README.md with a link to 2024 metabolomics file.Uploaded markdown version of new metabolomics tutorial.Update for statistical analysis of technical replicates (calculate their mean for significance testing)Updated metabolomics analysis for MRM data that is generated in 2024 version of the courseAdded Visualization_of_16S_results_2024.Rmd, which uses new path structure and has minor updates to analysis code. Will update furtherUpdated paths and other small changes to NanoCLUST_16S_analysis.mdAdded data from dry-run and nanoclust presentation.Update README.mdUpdate Visualization_of_16S_results.RmdUpdated links and some environment variables in notebooks.Removed the line to create new conda env for nanoclust - to save time for participants as they can use the premade conda env.updating few more paths etc etcupdating few more paths etc etcrenaming old concatemnated nanoclust output filespecififying nextflow versiongit clone nanoclust shenanigansgit clone nanoclust shenanigansMerge branch 'main' of https://git.embl.de/grp-zimmermann-kogadeeva/embo_mcd2022_day4more changes to Visualiztation_of_16S_results.rmdMore changes to Visualization_of_16S_results.Rmdudapting 16S vis .rmdupdating metadata pathadding NEW_timepoints_map.tsvAdded few more files.Added notebooks present in VM, but not in gitlab.final commit of the day, pleasefinal mergetestchaaaaangeeesadded community column to timepoints_map.xlsxadded BA 16S metadataupdated 16S metadata