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Zimmermann-Kogadeeva Group
PlottingOnGenome
Commits
312f1593
Commit
312f1593
authored
2 weeks ago
by
Bartosz Jan Bartmanski
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Merge branch 'dev'
parents
2810bd71
59f2c15f
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streamlit_app.py
+22
-2
22 additions, 2 deletions
streamlit_app.py
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22 additions
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2 deletions
streamlit_app.py
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22
−
2
View file @
312f1593
...
...
@@ -135,9 +135,29 @@ def convert_df(df, **kwargs):
def
show_results
():
inserts_all
=
st
.
session_state
.
pipeline
insert_type
=
st
.
selectbox
(
"
Insert type:
"
,
[
"
both
"
,
"
matched
"
,
"
unmatched
"
])
filter_threshold
=
st
.
slider
(
"
Filter threshold:
"
,
0.0
,
1.0
,
0.7
)
insert_type
=
st
.
selectbox
(
"
Insert type:
"
,
[
"
both
"
,
"
matched
"
,
"
unmatched
"
],
help
=
(
"
There are two types of inserts: matched and unmatched. Matched are when
"
"
both forward and reverse sequences could be matched to one another.
"
"
Unmatched are cases when either forward or reverse sequence could not be
"
"
matched to the corresponding one.
"
),
)
filter_threshold
=
st
.
slider
(
"
Filter threshold:
"
,
min_value
=
0.0
,
max_value
=
1.0
,
value
=
0.7
,
help
=
(
"
Threshold value for insert coverage value. Insert coverage here is the
"
"
ratio of length of sequence mapped to genome to the length of the whole
"
"
sequence.
"
),
)
buffer
=
st
.
slider
(
"
View window size:
"
,
...
...
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