Commits · dfbc4ed714ce70d095b6d965a0d996d42827d861 · Zimmermann-Kogadeeva Group / PlottingOnGenome · GitLab

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May 06, 2024
- Added functionality to parse gff files for genomes. · dfbc4ed7
  Bartosz Jan Bartmanski authored 10 months ago
  
  dfbc4ed7
May 01, 2024
- Bump version 0.1.4 -> 0.1.5 · fa0bd24e
  Bartosz Jan Bartmanski authored 10 months ago
  
  0.1.5
  
  fa0bd24e
- Improved Dockerfile - added no-cache option to pip install · 696de821
  Bartosz Jan Bartmanski authored 10 months ago
  
  696de821
Apr 26, 2024
- Removed previous GUI - less maintainance and pysimplegui introduced registration to use it. · 2c058ef2
  Bartosz Jan Bartmanski authored 10 months ago
  
  2c058ef2
Apr 24, 2024
- Bump version 0.1.3 -> 0.1.4 · 3ec35cf9
  Bartosz Jan Bartmanski authored 10 months ago
  
  0.1.4
  
  3ec35cf9
- Fixed issue with correct_id function in main. Added functionality to streamlit... · d0b70eaa
  Bartosz Jan Bartmanski authored 10 months ago
  
  Fixed issue with correct_id function in main. Added functionality to streamlit app to accept multiple sequence files and with fas extension.
  d0b70eaa
Apr 23, 2024
- Bump version 0.1.2 -> 0.1.3 · 754c3f12
  Bartosz Jan Bartmanski authored 10 months ago
  
  0.1.3
  
  754c3f12
- Another fix to gitlab CI. · 0b9f375c
  Bartosz Jan Bartmanski authored 10 months ago
  
  0b9f375c
- Fix to gitlab CI. · fe85a063
  Bartosz Jan Bartmanski authored 10 months ago
  
  fe85a063
- Bump version 0.1.1 -> 0.1.2 · b50db60d
  Bartosz Jan Bartmanski authored 10 months ago
  
  0.1.2
  
  b50db60d
- Added publish job in CI. · 435beb21
  Bartosz Jan Bartmanski authored 10 months ago
  
  435beb21
- Bump version 0.1.0 -> 0.1.1 · aea3fa4b
  Bartosz Jan Bartmanski authored 10 months ago
  
  0.1.1
  
  aea3fa4b
- Fix to run_pipeline func - mixed up args. · 4548ec4e
  Bartosz Jan Bartmanski authored 10 months ago
  
  4548ec4e
- Bump version 0.0.10 -> 0.1.0 · 7fb9dff9
  Bartosz Jan Bartmanski authored 10 months ago
  
  0.1.0
  
  7fb9dff9
- Renamed gitlab CI job. · 349a5dcb
  Bartosz Jan Bartmanski authored 10 months ago
  
  349a5dcb
- Added streamlit app (with Dockerfile) and added option to use any file as genome. · c1244ecf
  Bartosz Jan Bartmanski authored 10 months ago
  
  c1244ecf
Apr 17, 2024
- Added functionality to use genome from given file or downloaded from NCBI. · 07516249
  Bartosz Jan Bartmanski authored 11 months ago
  
  07516249
Mar 12, 2024
- Bump version 0.0.9 -> 0.0.10 · 65addb3c
  Bartosz Bartmanski authored 1 year ago
  
  0.0.10
  
  65addb3c
Mar 02, 2024
- Moved src layout. Added flake8 config. · 84fa74fb
  Bartosz Bartmanski authored 1 year ago
  
  84fa74fb
Aug 03, 2023
- Updated link in README to windows executable. · 6dc281b3
  Bartosz Bartmanski authored 1 year ago
  
  6dc281b3
- Updated version number · de7805f3
  Bartosz Bartmanski authored 1 year ago
  
  0.0.9
  
  de7805f3
- Added if statements to make sure plotting insert lengths distribution doesn't lead to error. · 01aab93c
  Bartosz Bartmanski authored 1 year ago
  
  01aab93c
Aug 02, 2023
- Updated link to download Windows exe. · 2296f358
  Bartosz Bartmanski authored 1 year ago
  
  2296f358
- Added plot_insert_lengths and to_dataframe functions to Pipeline class. · 0bc5b262
  Bartosz Bartmanski authored 1 year ago
  
  0.0.8
  
  0bc5b262
Jul 19, 2023
- Updated the download link. · e7dd8efc
  Bartosz Bartmanski authored 1 year ago
  
  e7dd8efc
- Added link to download the windows executable. · 11ccda82
  Bartosz Bartmanski authored 1 year ago
  
  11ccda82
- Updated README. · 3b8de4f6
  Bartosz Bartmanski authored 1 year ago
  
  3b8de4f6
Jul 17, 2023
- Changed default gui for output type. · 04230ab9
  Bartosz Bartmanski authored 1 year ago
  
  04230ab9
- Fixed exception handling in the GUI. · 24e57a8f
  Bartosz Bartmanski authored 1 year ago
  
  24e57a8f
- Mostly fixed exception handling · d04d09b0
  Bartosz Bartmanski authored 1 year ago
  
  d04d09b0
- Added assertion to handle out of bounds values for fitler_threashold. · 3419e11c
  Bartosz Bartmanski authored 1 year ago
  
  3419e11c
Jul 14, 2023
- Correction to setup.py - typo in path to one of console_scripts. · 21818194
  Bartosz Bartmanski authored 1 year ago
  
  21818194
- Added filter to get rid of inserts that have low coverege. · 5ed0c250
  Bartosz Bartmanski authored 1 year ago
  
  5ed0c250
Jun 30, 2023
- Added some comments to the code. · 38f128f0
  Bartosz Bartmanski authored 1 year ago
  
  38f128f0
- Small changes in plotting functions to account for python's 0-indexing. · ffed00a9
  Bartosz Bartmanski authored 1 year ago
  
  ffed00a9
- Incremented version number. · 4bfb861a
  Bartosz Bartmanski authored 1 year ago
  
  4bfb861a
Jun 27, 2023
- Added a popup in GUI to indicate that the process has started. · b8192a8b
  Bartosz Bartmanski authored 1 year ago
  
  b8192a8b
Jun 26, 2023
- Added caching of user input in the GUI. Changed how the data from NCBI is... · 41779acb
  Bartosz Bartmanski authored 1 year ago
  
  Added caching of user input in the GUI. Changed how the data from NCBI is saved - hashed searched term is used in filename.
  41779acb
Jun 23, 2023
- Added caching of user input in the GUI. · 28935eb9
  Bartosz Bartmanski authored 1 year ago
  
  28935eb9
Jun 20, 2023
- Small change to cli and gui interfaces - moved saving of figures outside of Pipeline class. · f656379e
  Bartosz Bartmanski authored 1 year ago
  
  f656379e