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Jean-Karim Heriche
agrotoxindb
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55ab436390dbf15d30f532168b2f27ce892f2cdc
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Created with Raphaël 2.2.0
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Fix screen xref initialization
main
main
Add screen xref.
Update schema image.
Remove warnings about missing ChEMBL/ChEBI IDs.
Use SELECT DISTINCT
Replace INSERT IGNORE with INSERT ON DUPLICATE KEY UPDATE. Bug fixes.
Formatting
Fix formatting
Add usage example and instructions for creating the database.
Add WellHandle$get_all_by_datafile()
Fix query to avoid return of duplicated datafiles.
Bug fixes.
Add missing outcome attribute of QC object.
Move QC outcome to link tables.
Fix retrieval of analysis from associated data.
Fix retrieval of well sample counts.
Fix retrieval of phenotypes by well, add options for retrieving wells by compound.
Pass DBI connection instead of agrotoxinDB DBConnection to dbBegin() and dbCommit().
Don't try to change database variable @@global.innodb_autoinc_lock_mode.
Store each plate as a transaction. Add fast mode option for storing screens. Add optional screen parameter to Well$get_all_by_compound().
Add methods and fix bugs.
Add methods. Update documentation (replace vector by list).
Fix a few bugs
Add code documentation
Update DB schema image.
Fix bug.
Fix bug.
Fix bug.
Change handling of relations between Analysis objects and Datafile objects. Add SQL to populate Screen_has_Plate and Screen_has_Analysis tables.
Initial commit
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