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Jean-Karim Heriche
Image Data Explorer
Commits
6566dfb4
Commit
6566dfb4
authored
1 year ago
by
Jean-Karim Heriche
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Add package configr to Dockerfile.
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2d53905e
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#45968
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1 year ago
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Stage: deploy
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6566dfb4
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@@ -12,7 +12,7 @@ RUN apt update && apt install -y libssl-dev liblzma-dev libbz2-dev libicu-dev li
RUN
R CMD javareconf
# Create
a
director
y
to mount eventual data
# Create director
ies
to mount eventual data
RUN
mkdir
-p
/data
ENV
DATADIR="/data"
...
...
@@ -32,7 +32,7 @@ COPY imageViewer /home/ide/app/image-data-explorer/imageViewer
# Install required R packages
RUN
R
-e
"install.packages(c('remotes', 'rversions', 'roxygen2', 'xml2', 'devtools'), repos=c('https://cloud.r-project.org/', 'https://ftp.gwdg.de/pub/misc/cran/'));
\
install.packages(c('data.table', 'shiny', 'DT', 'shinyFiles', 'shinycssloaders', 'shinydashboard', 'shinyjs', 'shinyWidgets', 'shinybusy', 'assertthat'), repos=c('https://cloud.r-project.org/', 'https://ftp.gwdg.de/pub/misc/cran/'));
\
install.packages(c('ggplot2', 'plotly', 'RANN', 'MASS', 'dbscan', 'uwot', 'xgboost', 'Ckmeans.1d.dp', 'e1071', 'caret', 'RColorBrewer', 'aws.s3'), repos=c('https://cloud.r-project.org/', 'https://ftp.gwdg.de/pub/misc/cran/'));
\
install.packages(c('ggplot2', 'plotly', 'RANN', 'MASS', 'dbscan', 'uwot', 'xgboost', 'Ckmeans.1d.dp', 'e1071', 'caret', 'RColorBrewer', 'aws.s3'
, 'configr'
), repos=c('https://cloud.r-project.org/', 'https://ftp.gwdg.de/pub/misc/cran/'));
\
install.packages('BiocManager', repos=c('https://cloud.r-project.org/', 'https://ftp.gwdg.de/pub/misc/cran/'));
\
install.packages(c('rJava', 'RCurl')); BiocManager::install('EBImage'); BiocManager::install('aoles/RBioFormats');
\
library(devtools); setwd('/home/ide/app/image-data-explorer/imageViewer'); install();"
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