Commits · master · Jean-Karim Heriche / SMLM.data.analysis

27 Jul, 2021 2 commits
- Added stats prefix to var to pass R CMD CHECK. · ee662084
  Jean-Karim Heriche authored Jul 27, 2021
  
  ee662084
- Renamed parameter dimension to dimensions. Added it to pssk() and get_kernel_matrix(). · e9be753d
  Jean-Karim Heriche authored Jul 27, 2021
  
  e9be753d
26 Jul, 2021 2 commits
- Added dimension argument to sliced_Wd(). · d617de61
  Jean-Karim Heriche authored Jul 26, 2021
  
  d617de61
- Fixed pssk() function. · 5410e0e0
  Jean-Karim Heriche authored Jul 26, 2021
  
  5410e0e0
23 Jul, 2021 1 commit
- Added rotx() and roty() utility functions; fixed rotz() function. · 822baec8
  Jean-Karim Heriche authored Jul 23, 2021
  
  822baec8
19 Jul, 2021 1 commit
- Added jrmpc() option for fixed variance iterations. · e903d3a2
  Jean-Karim Heriche authored Jul 19, 2021
  
  e903d3a2
14 Jul, 2021 1 commit
- Added scale option to locprec2cov(). · fad4e9e0
  Jean-Karim Heriche authored Jul 14, 2021
  
  fad4e9e0
13 Jul, 2021 1 commit
- Prevent removal of all GMM components in jrmpc's model selection. · 0d5801c4
  Jean-Karim Heriche authored Jul 13, 2021
  
  0d5801c4
09 Jul, 2021 1 commit
- Return GMM component support scores in jrmpc() · e4588ce5
  Jean-Karim Heriche authored Jul 09, 2021
  
  e4588ce5
07 Jul, 2021 2 commits
- Added utility function downsample(). · 9bfa09ec
  Jean-Karim Heriche authored Jul 07, 2021
  
  9bfa09ec
- Added utility function locprec2cov(). · 354e5e1e
  Jean-Karim Heriche authored Jul 07, 2021
  
  354e5e1e
02 Jul, 2021 1 commit
- Documented missing conv and iter in output from jrmpc(). Replaced warning()... · ae4afa7a
  Jean-Karim Heriche authored Jul 02, 2021
```
Documented missing conv and iter in output from jrmpc(). Replaced warning() with message() in locs_from_csv().
```
  ae4afa7a
28 Jun, 2021 2 commits
- Fix bug in points2img() when only one channel is selected. · ee328229
  Jean-Karim Heriche authored Jun 28, 2021
  
  ee328229
- locs2ps: allow 2D point sets, preserve localization precision and channel info. · 68735efb
  Jean-Karim Heriche authored Jun 28, 2021
```
points2img: fix bug.
```
  68735efb
02 Jun, 2021 2 commits
- Fixed function names that hadn't been corrected after renaming. · b908725a
  Jean-Karim Heriche authored Jun 02, 2021
  
  b908725a
- Renamed function gmmreg to wgmmreg to avoid confusion with published GMMreg algorithm. · e7289fde
  Jean-Karim Heriche authored Jun 02, 2021
  
  e7289fde
20 Apr, 2021 2 commits
- Renamed functions. · 153c9735
  Jean-Karim Heriche authored Apr 20, 2021
  
  153c9735
- Renamed functions. · 6ef1e572
  Jean-Karim Heriche authored Apr 20, 2021
  
  6ef1e572
16 Apr, 2021 3 commits
- Updated README. · a51562cc
  Jean-Karim Heriche authored Apr 16, 2021
  
  a51562cc
- Fixed check in find_elbow() · 2b79f8b4
  Jean-Karim Heriche authored Apr 16, 2021
  
  2b79f8b4
- Changes to pass CRAN checks · 8fbff173
  Jean-Karim Heriche authored Apr 16, 2021
  
  8fbff173
14 Apr, 2021 2 commits
- Added channels parameter to function pont_sets.from.locs(). · 9eda572b
  Jean-Karim Heriche authored Apr 14, 2021
  
  9eda572b
- Split function point_sets.from.csv() into two new functions locs.from.csv()... · df385dbc
  Jean-Karim Heriche authored Apr 14, 2021
```
Split function point_sets.from.csv() into two new functions locs.from.csv() and point_sets.from.locs().
```
  df385dbc
19 Mar, 2021 1 commit

Added parameters to point.sets.from.csv. Fixed export problem for... · cc1b8543

Jean-Karim Heriche authored Mar 19, 2021

Added parameters to point.sets.from.csv. Fixed export problem for extract.roi() function due to dot. Fixed bug in multichannel handling in points2img histogram method.

cc1b8543

11 Feb, 2021 1 commit
- Allow sampling after data filtering in point_sets.from.tiffs(). · c89dc484
  Jean-Karim Heriche authored Feb 11, 2021
  
  c89dc484
09 Oct, 2020 2 commits
- Pulled license file. · df359156
  Jean-Karim Heriche authored Oct 09, 2020
  
  df359156
- More efficient histogram method for the points2img function. · ef8bd747
  Jean-Karim Heriche authored Oct 08, 2020
  
  ef8bd747
28 Sep, 2020 1 commit
- Added LICENSE · da2cc582
  Jean-Karim Heriche authored Sep 28, 2020
  
  da2cc582
10 Aug, 2020 1 commit
- Registration functions now return translations in original coordinates system... · 63fd3a1b
  Jean-Karim Heriche authored Aug 10, 2020
```
Registration functions now return translations in original coordinates system (instead of scaled one).
```
  63fd3a1b
05 Aug, 2020 3 commits
- Updated README file. · 66ec30d3
  Jean-Karim Heriche authored Aug 05, 2020
  
  66ec30d3
- Updated README and DESCRIPTION files · abc1ce12
  Jean-Karim Heriche authored Aug 05, 2020
  
  abc1ce12
- Fixed scaling of returned point set in cpd(). Implemented scale option to icp(). · 82a2a274
  Jean-Karim Heriche authored Aug 05, 2020
  
  82a2a274
04 Aug, 2020 1 commit
- Initial rewrite of icp() to get rid of dependency on the Morpho package. · 7ee68a86
  Jean-Karim Heriche authored Aug 04, 2020
  
  7ee68a86
03 Aug, 2020 1 commit
- Revert change to jrmpc(), now returns centred point sets again. · 0d1b3788
  Jean-Karim Heriche authored Aug 03, 2020
  
  0d1b3788
27 Jul, 2020 1 commit
- Moved localDensities function from registration.R to utils.R. Coordinates... · c6a3884f
  Jean-Karim Heriche authored Jul 27, 2020
```
Moved localDensities function from registration.R to utils.R. Coordinates returned by jrmpc not centred anymore.
```
  c6a3884f
24 Jul, 2020 1 commit
- Added function img2ps. · da4fbad7
  Jean-Karim Heriche authored Jul 24, 2020
  
  da4fbad7
17 Jun, 2020 1 commit
- Fixed bug in getting persistence diagram from distance function in less than 3d. · 9224f4de
  Jean-Karim Heriche authored Jun 17, 2020
  
  9224f4de
20 May, 2020 2 commits
- Made cpd() return the whole transformed point set when working with a subsample. · 9dcab9bd
  Jean-Karim Heriche authored May 20, 2020
  
  9dcab9bd
- Added utils function rotz(). · 13515497
  Jean-Karim Heriche authored May 20, 2020
  
  13515497
18 May, 2020 1 commit
- Added rotation.only and model.selection.threshold parameters to function jrmpc() · f57b44ec
  Jean-Karim Heriche authored May 18, 2020
  
  f57b44ec