... | ... | @@ -3,8 +3,36 @@ __LocScale__ performs local amplitude scaling based on a atomic reference struct |
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Requires `sparx` and `EMAN2`.
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```
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usage: locscale.py -c model.pdb -m map.mrc -dmin resolution
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[-h] [--out OUT] [--mask MASKFILE]
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[--table TABLE] [--level LEVEL]
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[--radius RADIUS] [--bfactor BFACTOR]
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[--threshold THRESHOLD] [--overall]
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[--verbose]
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*** Performs local amplitude scaling against atomic reference ***
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``` usage: locscale.py ```
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Input:
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-c model.pdb, --model model.pdb
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Input filename PDB
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-m map.ccp4, --map map.ccp4
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Input filename map
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-dmin resolution map resolution
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Options:
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-h, --help show this help message and exit
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--out OUT Output filename RSCC table
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--mask MASKFILE Input filename mask
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--table TABLE Scattering table [electron, itcc]
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--level LEVEL level of rscc computation [atom, residue, auto]
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--radius RADIUS atom radius [A]
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--bfactor BFACTOR set bfactor [A^2]
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--threshold THRESHOLD only print residues with rscc < threshold
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--overall only prints overall cc
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--verbose print result to stdout
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```
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__* Note:__ Input map needs to be in CCP4 format!
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[source](source) |
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\ No newline at end of file |