... | @@ -4,32 +4,10 @@ To produce the desired result of locally contrast-optimized maps, LocScale requi |
... | @@ -4,32 +4,10 @@ To produce the desired result of locally contrast-optimized maps, LocScale requi |
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The model map can be generated by any procedure that computes the model map from B-factor weighted structure factors using electron scattering atomic form factors. We here provide a recommended procedure to generate the model map and check consistency with the experimental data:
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The model map can be generated by any procedure that computes the model map from B-factor weighted structure factors using electron scattering atomic form factors. We here provide a recommended procedure to generate the model map and check consistency with the experimental data:
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To generate a model map with B-facvtor weighted structure factors and electron form factors we recommend to use the provided [```prepare_locscale_input.py```](prepare_locscale_input.py) script.
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To generate a model map with B-facvtor weighted structure factors and electron form factors we recommend to use the provided [```prepare_locscale_input.py```](prepare_locscale_input.py) script.
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```
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```
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usage: prepare_locscale_input -mc model.pdb -em map.ccp4 [-dmin resolution] [-h]
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phenix.python prepare_locscale_input.py -mc pdb3j5p.pdb -em emd_5778_full.map
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[--out OUT] [--table TABLE] [--apix APIX] [--radius RADIUS]
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[--bfactor BFACTOR] [--verbose]
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*** Computes reference map from PDB model and generates files for LocScale ***
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Input:
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-mc model.pdb, --model model.pdb
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Input filename PDB
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-em map.ccp4, --map map.ccp4
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Input filename map
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Options:
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-dmin resolution map resolution
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-h, --help show this help message and exit
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--out OUT Output filename RSCC table
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--table TABLE Scattering table [electron, itcc]
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--apix APIX pixel size [A]
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--radius RADIUS atom radius [A]
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--bfactor BFACTOR set bfactor [A^2]
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--verbose print result to stdout
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```
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```
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#### Link to [source](https://git.embl.de/jakobi/LocScale/blob/master/prepare_locscale_input.py)
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#### Link to [source](https://git.embl.de/jakobi/LocScale/blob/master/prepare_locscale_input.py)
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