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imene-cprg-transbac-mob
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George Kritikos
imene-cprg-transbac-mob
Commits
89cc7b70
Commit
89cc7b70
authored
6 years ago
by
George Kritikos
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finalized analysis, saved hit tables
parent
77ac1f77
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3.make.plots.R
+2
-2
2 additions, 2 deletions
3.make.plots.R
4.save.hit.tables.R
+2
-2
2 additions, 2 deletions
4.save.hit.tables.R
Transbac dye intensity vs size.pdf
+0
-0
0 additions, 0 deletions
Transbac dye intensity vs size.pdf
with
4 additions
and
4 deletions
3.make.plots.R
+
2
−
2
View file @
89cc7b70
...
...
@@ -103,6 +103,6 @@ ggplot(transbac.18h[size>0], aes(x=avg..dye.intensity.in.colony, y=size))+
geom_text_repel
(
data
=
transbac.18h
[
size
>
10000
][
replicate.number
==
"A"
],
aes
(
label
=
gene
),
size
=
1.6
,
segment.size
=
0.2
)
+
theme_bw
()
+
scale_x_continuous
(
"avg. dye intensity in colony"
)
+
ggtitle
(
"
t
ransbac dye intensity vs size"
,
"showing gene names only for replicate A"
)
ggsave
(
"
t
ransbac dye intensity vs size.pdf"
,
width
=
450
/
72
,
height
=
300
/
72
)
ggtitle
(
"
T
ransbac dye intensity vs size"
,
"showing gene names only for replicate A"
)
ggsave
(
"
T
ransbac dye intensity vs size.pdf"
,
width
=
450
/
72
,
height
=
300
/
72
)
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4.save.hit.tables.R
+
2
−
2
View file @
89cc7b70
...
...
@@ -57,7 +57,7 @@ mob.gene.names.replicates.over.10000.size[gene=="bglB", product:="6-phospho-β-g
#write tables ####
'################################################'
fwrite
(
mob.gene.names.replicates.over.10000.size
,
"mob.size.hits.csv"
)
fwrite
(
transbac.gene.names.replicates.over.10000.size
[
order
(
replicates.hits
,
decreasing
=
T
)],
"transbac.size.hits.csv"
)
fwrite
(
mob.gene.names.replicates.over.10000.size
[
order
(
replicates.hits
,
decreasing
=
T
)]
,
"mob.size.hits.csv"
)
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Transbac dye intensity vs size.pdf
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89cc7b70
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