Release v0.3.4

.github/workflows/package.yml

@@ -7,28 +7,28 @@ on:
 
 jobs:
 
-  wheel-linux-aarch64:
-    name: Build Linux wheels (Aarch64)
-    runs-on: ubuntu-latest
-    if: "startsWith(github.ref, 'refs/tags/v')"
-    steps:
-    - uses: actions/checkout@v4
-    - name: Set up QEMU
-      id: qemu
-      uses: docker/setup-qemu-action@v3
-      with:
-        platforms: all
-    - name: Build manylinux wheels
-      uses: pypa/cibuildwheel@v2.21.3
-      env:
-        CIBW_ARCHS: aarch64
-        CIBW_BUILD: 'cp*-manylinux_aarch64'
-      with:
-        output-dir: dist
-    - uses: actions/upload-artifact@v4
-      with:
-        name: wheels-manylinux_aarch64
-        path: dist/*
+  # wheel-linux-aarch64:
+  #   name: Build Linux wheels (Aarch64)
+  #   runs-on: ubuntu-latest
+  #   if: "startsWith(github.ref, 'refs/tags/v')"
+  #   steps:
+  #   - uses: actions/checkout@v4
+  #   - name: Set up QEMU
+  #     id: qemu
+  #     uses: docker/setup-qemu-action@v3
+  #     with:
+  #       platforms: all
+  #   - name: Build manylinux wheels
+  #     uses: pypa/cibuildwheel@v2.21.3
+  #     env:
+  #       CIBW_ARCHS: aarch64
+  #       CIBW_BUILD: 'cp*-manylinux_aarch64'
+  #     with:
+  #       output-dir: dist
+  #   - uses: actions/upload-artifact@v4
+  #     with:
+  #       name: wheels-manylinux_aarch64
+  #       path: dist/*
 
   wheel-linux-x86_64:
     name: Build Linux wheels (x86-64)
@@ -52,6 +52,9 @@ jobs:
     runs-on: macOS-latest
     steps:
     - uses: actions/checkout@v4
+    - uses: dtolnay/rust-toolchain@stable
+      with:
+        targets: x86_64-apple-darwin
     - name: Build manylinux wheels
       uses: pypa/cibuildwheel@v2.21.3
       env:
@@ -72,6 +75,8 @@ jobs:
     steps:
     - uses: actions/checkout@v4
     - uses: dtolnay/rust-toolchain@stable
+      with:
+        targets: aarch64-apple-darwin
     - name: Build manylinux wheels
       uses: pypa/cibuildwheel@v2.21.3
       env:
@@ -132,7 +137,7 @@ jobs:
       id-token: write
     needs:
     - sdist
-    - wheel-linux-aarch64
+    # - wheel-linux-aarch64
     - wheel-linux-x86_64
     - wheel-macos-aarch64
     - wheel-macos-x86_64

CHANGELOG.md

@@ -6,7 +6,23 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 
 
 ## [Unreleased]
-[Unreleased]: https://github.com/althonos/gb-io.py/compare/v0.3.2...HEAD
+[Unreleased]: https://github.com/althonos/gb-io.py/compare/v0.3.4...HEAD
+
+
+## [v0.3.4] - 2025-01-22
+[v0.3.4]: https://github.com/althonos/gb-io.py/compare/v0.3.3...v0.3.4
+
+### Added
+- Support for Python 3.13.
+
+### Changed
+- Bump `pyo3` dependency to `v0.23` and remove deprecated interface.
+- Bump `pyo3-built` dependency to `v0.6.0`.
+- Use `maturin` instead of `setuptools-rust` to build crate.
+- Use PyData Sphinx theme to render the documentation.
+
+### Fixed
+- Change working directory to access test data in `tests.test_doctest`.
 
 
 ## [v0.3.3] - 2024-04-14

COPYING

 MIT License
 
-Copyright (c) 2022-2024 Martin Larralde <martin.larralde@embl.de>
+Copyright (c) 2022-2025 Martin Larralde <martin.larralde@embl.de>
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

Cargo.lock

@@ -167,7 +167,7 @@ dependencies = [
 
 [[package]]
 name = "gb-io-py"
-version = "0.3.3"
+version = "0.3.4"
 dependencies = [
  "built",
  "gb-io",

Cargo.toml

 [package]
 name = "gb-io-py"
-version = "0.3.3"
+version = "0.3.4"
 authors = ["Martin Larralde <martin.larralde@embl.de>"]
 edition = "2021"
 license = "MIT"

docs/_static/json/switcher.json

 [
     {
         "name": "v0.3 (latest)",
-        "version": "0.3.3",
-        "url": "https://gb-io.readthedocs.io/en/v0.3.3/"
+        "version": "0.3.4",
+        "url": "https://gb-io.readthedocs.io/en/v0.3.4/"
     },
     {
         "name": "v0.2",

docs/guide/copyright.rst

@@ -7,3 +7,14 @@ Copyright Notice
 The ``gb-io`` library is developed under the MIT license:
 
 .. literalinclude:: ../../COPYING 
+
+
+Additional libraries
+--------------------
+
+This package may vendor the source of several additional packages that are
+licensed under the `Apache-2.0 <https://choosealicense.com/licenses/apache-2.0/>`_,
+`MIT <https://choosealicense.com/licenses/mit/>`_ or
+`BSD-3-Clause <https://choosealicense.com/licenses/bsd-3-clause/>`_ licenses;
+see the license file distributed with the source copy of each vendored
+dependency for more information.
\ No newline at end of file

docs/guide/install.rst

@@ -35,19 +35,19 @@ use the ``conda`` installer:
    $ conda install -c bioconda gb-io
 
 
-.. Arch User Repository
-.. ^^^^^^^^^^^^^^^^^^^^
+Arch User Repository
+^^^^^^^^^^^^^^^^^^^^
 
-.. A package recipe for Arch Linux can be found in the Arch User Repository
-.. under the name `python-gb-io <https://aur.archlinux.org/packages/python-gb-io>`_.
-.. It will always match the latest release from PyPI.
+A package recipe for Arch Linux can be found in the Arch User Repository
+under the name `python-gb-io <https://aur.archlinux.org/packages/python-gb-io>`_.
+It will always match the latest release from PyPI.
 
-.. Steps to install on ArchLinux depend on your `AUR helper <https://wiki.archlinux.org/title/AUR_helpers>`_
-.. (``yaourt``, ``aura``, ``yay``, etc.). For ``aura``, you'll need to run:
+Steps to install on ArchLinux depend on your `AUR helper <https://wiki.archlinux.org/title/AUR_helpers>`_
+(``yaourt``, ``aura``, ``yay``, etc.). For ``aura``, you'll need to run:
 
-.. .. code:: console
+.. code:: console
 
-..     $ aura -A python-gb-io
+    $ aura -A python-gb-io
 
 
 .. BioArchLinux