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Martin Larralde
PyFastANI
Commits
782145f7
Commit
782145f7
authored
3 years ago
by
Martin Larralde
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Release v0.1.0
parent
e2c35832
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.github/workflows/package.yml
+3
-5
3 additions, 5 deletions
.github/workflows/package.yml
CHANGELOG.md
+5
-1
5 additions, 1 deletion
CHANGELOG.md
README.md
+2
-2
2 additions, 2 deletions
README.md
setup.cfg
+6
-9
6 additions, 9 deletions
setup.cfg
with
16 additions
and
17 deletions
.github/workflows/package.yml
+
3
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name
:
Package
name
:
Package
on
:
on
:
-
push
push
:
# push:
tags
:
# tags:
-
v*.*.*
# - v*.*.*
jobs
:
jobs
:
...
@@ -121,7 +120,6 @@ jobs:
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@@ -121,7 +120,6 @@ jobs:
-
3.7
-
3.7
-
3.8
-
3.8
-
3.9
-
3.9
-
pypy-3.6
-
pypy-3.7
-
pypy-3.7
steps
:
steps
:
-
name
:
Setup Python ${{ matrix.python-version }}
-
name
:
Setup Python ${{ matrix.python-version }}
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CHANGELOG.md
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@@ -6,6 +6,10 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
...
@@ -6,6 +6,10 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
## [Unreleased]
## [Unreleased]
[
Unreleased
]:
https://github.com/althonos/pyrodigal/compare/4bd3017...HEAD
[
Unreleased
]:
https://github.com/althonos/pyrodigal/compare/v0.1.0...HEAD
## [v0.1.0] - 2021-06-13
[
v0.1.0
]:
https://github.com/althonos/pyrodigal/compare/4bd3017...v0.1.0
Initial release.
Initial release.
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README.md
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@@ -52,7 +52,7 @@ pyFastANI can be installed directly from [PyPI](https://pypi.org/project/pyfasta
...
@@ -52,7 +52,7 @@ pyFastANI can be installed directly from [PyPI](https://pypi.org/project/pyfasta
which hosts some pre-built CPython wheels for x86-64 Unix platforms, as well
which hosts some pre-built CPython wheels for x86-64 Unix platforms, as well
as the code required to compile from source with Cython:
as the code required to compile from source with Cython:
```
console
```
console
$
pip
install
py
rodigal
$
pip
install
py
fastani
```
```
Note that in the event you compile from source, you will need to have the
Note that in the event you compile from source, you will need to have the
...
@@ -72,7 +72,7 @@ affect the `name` attribute of the hits returned for a query.*
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@@ -72,7 +72,7 @@ affect the `name` attribute of the hits returned for a query.*
Biopython does not let us access to the sequence directly, so we need to
Biopython does not let us access to the sequence directly, so we need to
convert it to bytes first with the
`bytes`
builtin function. For older
convert it to bytes first with the
`bytes`
builtin function. For older
versions of Biopython (earlier than 1.79), use
`record.seq.encode()`
versions of Biopython (earlier than 1.79), use
`record.seq.encode()`
instead of
`bytes(record.seq)
.
`
instead of
`bytes(record.seq)`
.
```
python
```
python
import
pyfastani
import
pyfastani
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setup.cfg
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@@ -15,7 +15,7 @@ license = MIT
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@@ -15,7 +15,7 @@ license = MIT
platform
= posix
platform
= posix
keywords
= bioinformatics, genomics, average, nucleotide, identity
keywords
= bioinformatics, genomics, average, nucleotide, identity
classifier
=
classifier
=
Development
Status ::
3
-
Alph
a
Development
Status ::
4
-
Bet
a
Intended
Audience :: Developers
Intended
Audience :: Developers
Intended
Audience :: Science/Research
Intended
Audience :: Science/Research
License
:: OSI Approved :: MIT License
License
:: OSI Approved :: MIT License
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@@ -30,15 +30,12 @@ classifier =
...
@@ -30,15 +30,12 @@ classifier =
Programming
Language :: Python :: Implementation :: PyPy
Programming
Language :: Python :: Implementation :: PyPy
Topic
:: Scientific/Engineering :: Bio-Informatics
Topic
:: Scientific/Engineering :: Bio-Informatics
Topic
:: Scientific/Engineering :: Medical Science Apps.
Topic
:: Scientific/Engineering :: Medical Science Apps.
Typing
:: Typed
project_urls
=
project_urls
=
Documentation
= https://pyfastani.readthedocs.io/en/stable/
Bug
Tracker = https://github.com/althonos/pyfastani/issues
Bug
Tracker = https://github.com/althonos/pyFastANI/issues
Changelog
= https://github.com/althonos/pyfastani/blob/master/CHANGELOG.md
Changelog
= https://github.com/althonos/pyFastANI/blob/master/CHANGELOG.md
Coverage
= https://codecov.io/gh/althonos/pyfastani/
Coverage
= https://codecov.io/gh/althonos/pyFastANI/
Builds
= https://github.com/althonos/pyfastani/actions/
Builds
= https://github.com/althonos/pyFastANI/actions/
PyPI
= https://pypi.org/project/pyfastani
Zenodo
= https://doi.org/10.5281/zenodo.4270012
PyPI
= https://pypi.org/project/pyFastANI
[options]
[options]
zip_safe
= false
zip_safe
= false
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