Commits · 87b0f905a121a1a2087aa5293308460a8ad19465 · Martin Larralde / PyFastANI · GitLab

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Jul 22, 2023
- Release v0.5.0 · 87b0f905
  Martin Larralde authored 1 year ago
  
  v0.5.0
  
  87b0f905
Jul 21, 2023
- Only test package with `scikit-bio` for recent versions of Python · 258ec5a8
  Martin Larralde authored 1 year ago
  
  258ec5a8
- Use `PyUnicode` functions from builtin Cython headers · 1568bd67
  Martin Larralde authored 1 year ago
  
  1568bd67
- Add patch for missing `PyInterpreterState_GetID` on PyPy · feaac3d0
  Martin Larralde authored 1 year ago
  
  feaac3d0
- Fix PyPI download badge in `README.md` · d2a7edd2
  Martin Larralde authored 1 year ago
  
  d2a7edd2
- Mention Piwheels package index in documentation [ci skip] · c8e4be5d
  Martin Larralde authored 1 year ago
  
  c8e4be5d
- Use `PyUnicode` functions from builtin Cython headers · d11e5def
  Martin Larralde authored 1 year ago
  
  d11e5def
- Bump Cython dependency to `v3.0` · 2efb6a09
  Martin Larralde authored 1 year ago
  
  2efb6a09
- Fix `check` step of `PKGBUILD` template [ci skip] · 72339d42
  Martin Larralde authored 1 year ago
  
  72339d42
Apr 19, 2023
- Fix `cibuildwheel` test dependencies in `package.yml` workflow · ca110b20
  Martin Larralde authored 1 year ago
  
  ca110b20
- Pin Ubuntu runner in `test.yml` to keep testing on Python 3.6 · 0aa6e0d9
  Martin Larralde authored 1 year ago
  
  0aa6e0d9
- Avoid failing CI on coverage collection failure in `test.yml` workflow · fec46e73
  Martin Larralde authored 1 year ago
  
  fec46e73
- Ignore coverage of test files in `setup.cfg` · e4a8720d
  Martin Larralde authored 1 year ago
  
  e4a8720d
- Update `package.yml` Actions workflow to use `cibuildwheel` · d20395b7
  Martin Larralde authored 1 year ago
  
  d20395b7
- Bump required `coverage` to `6.0` in GitHub Actions · ec081315
  Martin Larralde authored 1 year ago
  
  ec081315
Apr 17, 2023
- Remove `codecov` from Actions workflows requirements · 5b9fd957
  Martin Larralde authored 1 year ago
  
  5b9fd957
Feb 08, 2023
- Fix link to documentation in `__init__.py` [ci skip] · cc663588
  Martin Larralde authored 2 years ago
  
  cc663588
- Fix release links in `CHANGELOG.md` [ci skip] · 8cbac933
  Martin Larralde authored 2 years ago
  
  8cbac933
- Add link to `pyskani` in `README.md` [ci skip] · 2022eddd
  Martin Larralde authored 2 years ago
  
  2022eddd
Feb 06, 2023
- Prefer binary when installing wheels in GitHub Actions · 91c9d7e3
  Martin Larralde authored 2 years ago
  
  91c9d7e3
Feb 02, 2023
- Fix badges and in `README.md` and documentation [ci skip] · 707d2fff
  Martin Larralde authored 2 years ago
  
  707d2fff
Nov 16, 2022
- Configure GitHub Actions to run tests and release wheels for Python 3.11 · 1a30d4f9
  Martin Larralde authored 2 years ago
  
  1a30d4f9
- Add missing signature of `Sketch.index` to type stubs · 730165a6
  Martin Larralde authored 2 years ago
  
  730165a6
Nov 09, 2022
- Add `Citation` section and link to slides on F1000 in `README.md` [ci skip] · 1c713c69
  Martin Larralde authored 2 years ago
  
  1c713c69
Aug 20, 2022
- Release v0.4.1 · 2b2a5ff7
  Martin Larralde authored 2 years ago
  
  v0.4.1
  
  2b2a5ff7
- Skip decoding of sequences too small to be processed in `Mapper.query_draft` · 9d1c177d
  Martin Larralde authored 2 years ago
  
  9d1c177d
- Sort hits by identity in descending order before returning them in `Mapper` · 5d52cc60
  Martin Larralde authored 2 years ago
  
  5d52cc60
Aug 12, 2022
- Add a lock to `Sketch` to avoid data races · b461c5f5
  Martin Larralde authored 2 years ago
  
  b461c5f5
- Reduce footprint of pickled `Mapper` objects by skipping index serialization · 2cb3f635
  Martin Larralde authored 2 years ago
  
  2cb3f635
Aug 05, 2022
- Use lists instead of arrays to store state of `Minimizers` · 125528c9
  Martin Larralde authored 2 years ago
  
  125528c9
Aug 04, 2022
- Add `multi-threading` feature to the documentation index [ci skip] · b7d37fbd
  Martin Larralde authored 2 years ago
  
  b7d37fbd
- Add instructions on how to run benchmarks to `CONTRIBUTING.md` [ci skip] · d1f18c60
  Martin Larralde authored 2 years ago
  
  d1f18c60
- Fix link to `v0.4.0` in `CHANGELOG.md` [ci skip] · 46dcfacb
  Martin Larralde authored 2 years ago
  
  46dcfacb
- Add benchmark results to `README.md` [ci skip] · eb918b1f
  Martin Larralde authored 2 years ago
  
  eb918b1f
Aug 03, 2022
- Release v0.4.0 · 090629be
  Martin Larralde authored 2 years ago
  
  v0.4.0
  
  090629be
- Fix missing include path in `setup.py` for building against `cpu_features` · f96e7051
  Martin Larralde authored 2 years ago
  
  f96e7051
- Setup `package.yml` workflow to compile wheels for Aarch64 Linux platforms · 0d06f6a8
  Martin Larralde authored 2 years ago
  
  0d06f6a8
- Avoid spawning a pool if `Mapper` methods are called with `threads=1` · b3c2a724
  Martin Larralde authored 2 years ago
  
  b3c2a724
- Add benchmarks for next `pyfastani` release · 37031d74
  Martin Larralde authored 2 years ago
  
  37031d74
- Fix path to data folder in `benches/mapping/bench.py` · d5b107ae
  Martin Larralde authored 2 years ago
  
  d5b107ae