Commits · main · Martin Larralde / PyFastANI · GitLab

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Mar 12, 2025
- Add `CITATION.cff` file with bioRxiv preprint [ci skip] · 8f69cfb6
  Martin Larralde authored 2 days ago
  
  8f69cfb6
Feb 18, 2025
- Add link to preprint in `README.md` [ci skip] · 4edefe78
  Martin Larralde authored 3 weeks ago
  
  4edefe78
Feb 14, 2025
- Use native GitHub Actions runners to build `aarch64` wheels [ci skip] · 5f5293dc
  Martin Larralde authored 3 weeks ago
  
  5f5293dc
Jan 12, 2025
- Release v0.6.1 · e3638728
  Martin Larralde authored 2 months ago
  
  v0.6.1
  
  e3638728
- Fix some tests failing on missing test data files · 6fa0571a
  Martin Larralde authored 2 months ago
  
  6fa0571a
- Use CMake project version to add version to compiled extension · ea5b10db
  Martin Larralde authored 2 months ago
  
  ea5b10db
- Fix CMake configuration files to support compiling with older CMake versions · ee25b374
  Martin Larralde authored 2 months ago
  
  ee25b374
Dec 05, 2024
- Use GitHub Gist to get the related projects cards from the documentation [ci skip] · 889d2d39
  Martin Larralde authored 3 months ago
  
  889d2d39
- Update runner versions used in GitHub Actions workflows · 2d13c4af
  Martin Larralde authored 3 months ago
  
  2d13c4af
Dec 04, 2024
- Add up-to-date benchmarks for release `v0.6.0` · 5357c8dd
  Martin Larralde authored 3 months ago
  
  5357c8dd
- Fix issues with benchmark scripts and data [ci skip] · 96e0f879
  Martin Larralde authored 3 months ago
  
  96e0f879
Oct 25, 2024
- Update `package.yml` Actions workflow to use one runner per architecture · 076a1f90
  Martin Larralde authored 4 months ago
  
  076a1f90
- Add `cibuildwheel` configuration to `pyproject.toml` [ci skip] · 6c11c671
  Martin Larralde authored 4 months ago
  
  6c11c671
Oct 22, 2024
- Reduce `sdist` size by excluding some vendored files [ci skip] · 499f7f3c
  Martin Larralde authored 4 months ago
  
  499f7f3c
- Fix deployment to AUR in `package.yml` [ci skip] · 58942f39
  Martin Larralde authored 4 months ago
  
  58942f39
- Release v0.6.0 · 08879170
  Martin Larralde authored 4 months ago
  
  v0.6.0
  
  08879170
Oct 21, 2024
- Fix compilation of NEON code [ci skip] · 78f7c1e7
  Martin Larralde authored 4 months ago
  
  78f7c1e7
- Update `PKGBUILD` to use new `scikit-build-core` build · eec8d98e
  Martin Larralde authored 4 months ago
  
  eec8d98e
- Update documentation index and contribution guide [ci skip] · 843fd948
  Martin Larralde authored 4 months ago
  
  843fd948
- Update documentation to use PyData theme [ci skip] · 979feeea
  Martin Larralde authored 4 months ago
  
  979feeea
- Remove outdated `setuptools` distribution files · 9a3bebb9
  Martin Larralde authored 4 months ago
  
  9a3bebb9
- Remove install instructions using `setuptools` · f0a9a2bb
  Martin Larralde authored 4 months ago
  
  f0a9a2bb
- Move project metadata to `pyproject.toml` · 6707d00a
  Martin Larralde authored 4 months ago
  
  6707d00a
- Remove Biopython from test dependencies for Python 3.13 compatibility · 78cc279c
  Martin Larralde authored 4 months ago
  
  78cc279c
- Update GitHub Actions to build and test for Python 3.13 · 77c5371d
  Martin Larralde authored 4 months ago
  
  77c5371d
- Fix `PyInterpreterState_GetID` patch in CMake · 8f3d32c1
  Martin Larralde authored 4 months ago
  
  8f3d32c1
- Fix OpenMP stub patch used for FastANI on MacOS · 4765f516
  Martin Larralde authored 4 months ago
  
  4765f516
- Fix discover of tests in `test.yml` Actions workflow · 450898f7
  Martin Larralde authored 4 months ago
  
  450898f7
- Fix path to test requirements in `test.yml` Actions workflow · 058fe50d
  Martin Larralde authored 4 months ago
  
  058fe50d
- Update GitHub Actions to use `pip` editable mode · d783d332
  Martin Larralde authored 4 months ago
  
  d783d332
- Fix exception handling in some `Mapper` Cython functions · 4378fcb0
  Martin Larralde authored 4 months ago
  
  4378fcb0
- Use system-wide `Boost::math` and only compile local version as fallback · 694e88e1
  Martin Larralde authored 4 months ago
  
  694e88e1
- Bump embedded `cpu-features` to `v0.9.0` · 5603acac
  Martin Larralde authored 4 months ago
  
  5603acac
- Fix paths to FastANI test data in `pyfastani.tests` · a26ee94f
  Martin Larralde authored 4 months ago
  
  a26ee94f
- Fix include guards in `sequtils` helper module · 8697d766
  Martin Larralde authored 4 months ago
  
  8697d766
- Add CMake files to patch the headers and compile Cython code · 4a6b9db5
  Martin Larralde authored 4 months ago
  
  4a6b9db5
- Fix potential null pointer dereference in `Parser.__dealloc__` · e0bc75b2
  Martin Larralde authored 4 months ago
  
  e0bc75b2
- Move `pyfastani` module to `src` folder · 6bba1b00
  Martin Larralde authored 4 months ago
  
  6bba1b00
- Fix outdated permissions for GitHub Releases [ci skip] · 8fb00438
  Martin Larralde authored 5 months ago
  
  8fb00438
Feb 20, 2024
- Add ReadTheDocs configuration file [ci skip] · 8937ed4f
  Martin Larralde authored 1 year ago
  
  8937ed4f