Commits · f37361ee40bbdac0aa45363eb354e3528126f1a8 · Martin Larralde / PyHMMER · GitLab

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Jul 10, 2024
- Use `sphinx-design` to summarize features in docs [ci skip] · 0ec1eefd
  Martin Larralde authored 8 months ago
  
  0ec1eefd
Mar 04, 2024
- Add badge with citations to `README.md` [ci skip] · 564b679b
  Martin Larralde authored 1 year ago
  
  564b679b
Aug 20, 2023
- Release v0.10.2 · 5f656d6f
  Martin Larralde authored 1 year ago
  
  v0.10.2
  
  5f656d6f
Jul 31, 2023
- Update download links and badges in `README.md` [ci skip] · df2cc87a
  Martin Larralde authored 1 year ago
  
  df2cc87a
Apr 30, 2023
- Add Bioinformatics paper to `README.md` and documentation [ci skip] · d3f28ccb
  Martin Larralde authored 1 year ago
  
  d3f28ccb
Mar 10, 2023
- Update `README.md` with links to the example files [ci skip] · b7ac02c2
  Martin Larralde authored 2 years ago
  
  b7ac02c2
Dec 19, 2022
- Update GitHub Actions badge in `README.md` [ci skip] · 8d181d37
  Martin Larralde authored 2 years ago
  
  8d181d37
Dec 04, 2022
- Add new benchmarks for `v0.7.0` · 3186f55c
  Martin Larralde authored 2 years ago
  
  3186f55c
Nov 22, 2022
- Fix filenames in the example code of `README.md` [ci skip] · 83e4269a
  Martin Larralde authored 2 years ago
  
  83e4269a
Aug 12, 2022
- Fix capitalization of project name in documentation [ci skip] · e32302cc
  Martin Larralde authored 2 years ago
  
  e32302cc
- List some dependent projects in the `examples` page of the documentation [ci skip] · ce98b291
  Martin Larralde authored 2 years ago
  
  ce98b291
May 04, 2022
- Fix disclaimer in `README.md` [ci skip] · f47fb771
  Martin Larralde authored 2 years ago
  
  f47fb771
Apr 20, 2022
- Add the `ranges` argument to `Client` search method to restrict the search to certain targets · 86c7903c
  Martin Larralde authored 2 years ago
  
  86c7903c
Mar 14, 2022
- Release v0.5.0 · 90f3e3c0
  Martin Larralde authored 3 years ago
  
  v0.5.0
  
  90f3e3c0
Mar 13, 2022
- Add badge listing AUR package version on `README.md` [ci skip] · 375df704
  Martin Larralde authored 3 years ago
  
  375df704
Mar 03, 2022
- Update `SequenceFile.parse` to support digital mode and bytearray input · a977a2d2
  Martin Larralde authored 3 years ago
  
  a977a2d2
Dec 12, 2021
- Update code example and links to documentation in `README.md` [ci skip] · c73dd4db
  Martin Larralde authored 3 years ago
  
  c73dd4db
Sep 27, 2021
- Add missing documentation for `hmmalign` function in the API docs · 8dcdc03b
  Martin Larralde authored 3 years ago
  
  8dcdc03b
Jul 22, 2021
- Add figures and technical writeup for latest benchmarks to the documentation · ef9387df
  Martin Larralde authored 3 years ago
  
  ef9387df
May 14, 2021
- Renumber next release from `v0.3.2` to `v0.4.0` to introduce breaking changes · eb21a6c4
  Martin Larralde authored 3 years ago
  
  eb21a6c4
May 10, 2021
- Add a page explaining pyHMMER performance tricks to the docs · 3f9e55c9
  Martin Larralde authored 3 years ago
  
  3f9e55c9
- Update link to benchmark plot in `README.md` · bfa6e467
  Martin Larralde authored 3 years ago
  
  bfa6e467
Mar 09, 2021
- Improve index page in HTML documentation and update active-site example · 9e4063c2
  Martin Larralde authored 4 years ago
  
  9e4063c2
Mar 04, 2021
- Release v0.2.2 · 968376a3
  Martin Larralde authored 4 years ago
  
  v0.2.2
  
  968376a3
Jan 29, 2021
- Fix outdated badges in documentation index page · 3fcc437c
  Martin Larralde authored 4 years ago
  
  3fcc437c
Jan 21, 2021
- Add section about `hmmer-py` to `README.md` [ci skip] · 858f853b
  Martin Larralde authored 4 years ago
  
  858f853b
Jan 20, 2021
- Hardcode `pyhmmer.hmmer.phmmer` to use `Alphabet.amino` · f103f5f0
  Martin Larralde authored 4 years ago
  
  f103f5f0
- Improve `README.md` and add benchmarks as graphs instead of table · 65aa90d5
  Martin Larralde authored 4 years ago
  
  65aa90d5
Jan 13, 2021
- Add badge to Bioconda package to `README.md` [ci skip] · 35515154
  Martin Larralde authored 4 years ago
  
  35515154
Jan 07, 2021
- Replace Travis-CI badge with GitLab-CI in `README.md` [ci skip] · 1fd389b6
  Martin Larralde authored 4 years ago
  
  1fd389b6
Dec 01, 2020
- Add link to BSD-3 Choose A License page in `README.md` · 6308bdf1
  Martin Larralde authored 4 years ago
  
  6308bdf1
- Fix some typos in `README.md` [ci skip] · ae714275
  Martin Larralde authored 4 years ago
  
  ae714275
- Update benchmark section of `README.md` with latest results · fb7acdee
  Martin Larralde authored 4 years ago
  
  fb7acdee
- Improve `README.md` and add the contribution guide to the docs · 160de70e
  Martin Larralde authored 4 years ago
  
  160de70e
Nov 24, 2020
- Add badges to EMBL git mirror to `README.md` and documentation index · 37b20d05
  Martin Larralde authored 4 years ago
  
  37b20d05
- Add missing classes to Sphinx documentation index · 07950a83
  Martin Larralde authored 4 years ago
  
  07950a83
Nov 23, 2020
- Rewrite `pyhmmer.hmmer` to avoid merging hits from separate HMMs · be2f62a1
  Martin Larralde authored 4 years ago
  
  be2f62a1
Nov 18, 2020
- Add `TextSequence` and `DigitalSequence` to help with sequence formats · 8d3fcf66
  Martin Larralde authored 4 years ago
  
  8d3fcf66
Nov 12, 2020
- Add badge with DOI leading to Zenodo record [ci skip] · 04bbec06
  Martin Larralde authored 4 years ago
  
  04bbec06
- Release `v0.1.0-a2` · 4aee42f0
  Martin Larralde authored 4 years ago
  
  v0.1.0-a2
  
  4aee42f0