Commits · f37361ee40bbdac0aa45363eb354e3528126f1a8 · Martin Larralde / PyHMMER · GitLab

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Oct 08, 2024
- Fix use of deprecated `TopHits` properties in documentation · a13e32aa
  Martin Larralde authored 5 months ago
  
  a13e32aa
Jul 16, 2024
- Fix styling of logo in dark-mode in documentation index [ci skip] · 1584d40d
  Martin Larralde authored 8 months ago
  
  1584d40d
- Add explicit module names to API reference section of the docs [ci skip] · b8e84e20
  Martin Larralde authored 8 months ago
  
  b8e84e20
- Fix inverted titles in HMMER section of API reference [ci skip] · 0d64caf2
  Martin Larralde authored 8 months ago
  
  0d64caf2
- Fix remaining issues in documentation [ci skip] · 9bb027ea
  Martin Larralde authored 8 months ago
  
  9bb027ea
- Add `favicon` to website [ci skip] · 522ef649
  Martin Larralde authored 8 months ago
  
  522ef649
- Fix missing `__init__` signatures for most Cython types · 1a82b0aa
  Martin Larralde authored 8 months ago
  
  1a82b0aa
- Fix some remaining issues in Sphinx documentation [ci skip] · aed6b51b
  Martin Larralde authored 8 months ago
  
  aed6b51b
- Add logo and copyright links to documentation [ci skip] · 6523fb9a
  Martin Larralde authored 8 months ago
  
  6523fb9a
Jul 15, 2024
- Add copyright notice section with Easel and HMMER licensing [ci skip] · b800eb70
  Martin Larralde authored 8 months ago
  
  b800eb70
- Update related project cards in documentation [ci skip] · 1ca2f031
  Martin Larralde authored 8 months ago
  
  1ca2f031
Jul 10, 2024
- Update documentation index to show related packages [ci skip] · e7be21bd
  Martin Larralde authored 8 months ago
  
  e7be21bd
- Use `sphinx-design` to summarize features in docs [ci skip] · 0ec1eefd
  Martin Larralde authored 8 months ago
  
  0ec1eefd
- Remove import of `sphinx-bootstrap-theme` in docs [ci skip] · 4efc69b6
  Martin Larralde authored 8 months ago
  
  4efc69b6
- Expand new documentation [ci skip] · ed8536c9
  Martin Larralde authored 8 months ago
  
  ed8536c9
- Fix missing `api/hmmer/iter.rst` file and update styles · 945ee23e
  Martin Larralde authored 8 months ago
  
  945ee23e
- Reorganize documentation to use the PyData theme · e9b8d526
  Martin Larralde authored 8 months ago
  
  e9b8d526
Jun 19, 2024
- Fix resource links in `fetchmgs.ipynb` example notebook · 04a516b1
  Martin Larralde authored 9 months ago
  
  04a516b1
Apr 20, 2024
- Replace `t2pks.hmm` with `RREFam` in documentation [ci skip] · c5234e58
  Martin Larralde authored 11 months ago
  
  c5234e58
Mar 28, 2024
- Add missing BibTex file with citations to documentation [ci skip] · a260b8cf
  Martin Larralde authored 1 year ago
  
  a260b8cf
- Add more rules to `.gitignore` files [ci skip] · 75b4b02f
  Martin Larralde authored 1 year ago
  
  75b4b02f
Mar 27, 2024
- Add instructions to install package with BioArchLinux · b896f9fb
  Martin Larralde authored 1 year ago
  
  b896f9fb
Mar 13, 2024
- Fix typo in documentation [ci skip] · 31671a7d
  Martin Larralde authored 1 year ago
  
  31671a7d
Mar 04, 2024
- Add badge with citations to `README.md` [ci skip] · 564b679b
  Martin Larralde authored 1 year ago
  
  564b679b
- Add new publications to documentation [ci skip] · 53ac8473
  Martin Larralde authored 1 year ago
  
  53ac8473
Jan 27, 2024
- Add Cayman preprint to the publications [ci skip] · f27d3152
  Martin Larralde authored 1 year ago
  
  f27d3152
Jan 20, 2024
- Add Bakta and Pharokka to the documentation [ci skip] · 12ab83c2
  Martin Larralde authored 1 year ago
  
  12ab83c2
Nov 04, 2023
- Use `sphinxcontrib-jquery` in documentation [ci skip] · 232c05ec
  Martin Larralde authored 1 year ago
  
  232c05ec
Oct 21, 2023
- Improve documentation for `InvalidHMM` in `TraceAligner` · b25f2142
  Martin Larralde authored 1 year ago
  
  b25f2142
Oct 11, 2023
- Added new publication to the .rst (#54) · 6410c6cc
  Humood Alanzi authored 1 year ago
  
  6410c6cc
Aug 31, 2023
- Add missing `GeneticCode` documentation to the Sphinx pages · 47700b26
  Martin Larralde authored 1 year ago
  
  47700b26
Aug 17, 2023
- Update installation page in documentation [ci skip] · d3d1aac1
  Martin Larralde authored 1 year ago
  
  d3d1aac1
Aug 16, 2023
- Update `HMMFiles` recipe to avoid opening all files [ci skip] · cd23dbcd
  Martin Larralde authored 1 year ago
  
  cd23dbcd
Aug 02, 2023
- Add PMID:37455725 to the publications list [ci skip] · 5b58071d
  Martin Larralde authored 1 year ago
  
  5b58071d
- Bump Cython build dependency to `v3.0` · fb40facd
  Martin Larralde authored 1 year ago
  
  fb40facd
Jul 31, 2023
- Update download links and badges in `README.md` [ci skip] · df2cc87a
  Martin Larralde authored 1 year ago
  
  df2cc87a
Jul 18, 2023
- Fix typo in `Install` page of the documentation [ci skip] · e8f70f81
  Martin Larralde authored 1 year ago
  
  e8f70f81
Jun 07, 2023
- Add new exception types to the API documentation · 9a318078
  Martin Larralde authored 1 year ago
  
  9a318078
May 19, 2023
- Add missing plot for `v0.7.0` benchmark [ci skip] · 9fe958cb
  Martin Larralde authored 1 year ago
  
  9fe958cb
- Fix `Transitions` members not being rendered in docs [ci skip] · e1910a99
  Martin Larralde authored 1 year ago
  
  e1910a99