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Created with Raphaël 2.2.018Mar131264127Feb1420Jan105Nov27Oct2521181615141312111098718Jul171615109819Jun625Apr2028Mar2718131265421Feb20161527Jan206Dec28Nov5429Oct22114314Sep1331Aug20171643231Jul28201819Jun724May2019128Apr261413524Mar131017Feb26Jan2519Dec15148432130Nov292822106549Sep20Aug181228Jun2721207618May54130Apr29282725232221201915Mar14Fix typos in documentation index [ci skip]mastermasterReplace the `laccase.clw` file with `LuxC` in tests to reduce tests dataAdd tests for `DigitalMSA.identity_filter` on `LuxC.sto`Add preferred citation to `CITATION.cff` [ci skip]Fix invalid issue in `Matrix.__getitem__` on slices with no upper boundRemove `platform` key from `pyproject.toml` [ci skip]Add default values of `DigitalMSA.identity_filter` to `easel.pyi`Pin `Sphinx <8.2` to fix `nbsphinx` issue (spatialaudio/nbsphinx#825) [ci skip]Add `DigitalMSA.identity_filter` to filter the alignment sequences by identityFix casing in `examples/index.rst` [ci skip]Update index.rstUse native GitHub Actions runners to build `aarch64` wheels [ci skip]Fix MathJax in `LongTargetsPipeline` docstring [ci skip]Add link to PiWheels in `pyproject.toml` [ci skip]Fix issue on existing virtualenv in `PKGBUILD` [ci skip]Fix use of `query_name` in example of `README.md` [ci skip]Fix link to exmaple data in documentation notebooks [ci skip]Fix tests on MacOS failing in `test.yml` Actions workflowFix AUR deployment step in `package.yml` Actions workflowRemove 'experimental' disclaimer from `README.md` [ci skip]Update `test.yml` Actions workflow to run tests with Python 3.13Release v0.11.0v0.11.0v0.11.0Fix outdated runners in GitHub Actions [ci skip]Remove deprecated query properties of `TopHits`Use `test-extras` to install test requirements in `cibuildwheel` [ci skip]Setup compilation of HMMER impl for NEON and VMX platformsFix path to test data in docs and update Biopython inventory URL [ci skip]Update documentation to use `related.rst` from GitHub Gists [ci skip]Fix documentation build using outdated metadata [ci skip]Add tests for `__getbuffer__` implementation of `TextSequence` and `DigitalSequence`Silence `BrokenPipeError` exceptions of `pyhmmer.hmmer` workersFix issue with buffer export in `TextSequence` and `DigitalSequence`Add `mypy` type hints to buffer-protocol classes in `pyhmmer.easel`Implement read-only buffer protocol for `TextSequence` and `DigitalSequence`Disable `cibuildwheel` builds for free-threaded PythonUpdate `cibuildwheel` configuration in `package.yml` Actions workflowAdd `cibuildwheel` configuration to avoid rebuilding HMMER between Python versionsFix extraction of package version in `package.yml` [ci skip]Fix some Cython extension definitions and defines in `CythonExtension.cmake`Update `PKGBUILD` to use new `scikit-build-core` build [ci skip]