Fix region table in latest release

test/attributes/check_visually.py

+import h5py
+import vigra
+import numpy as np
+import pandas as pd
+from cremi_tools.viewer.volumina import view
+
+
+def check_region_mapping():
+    t = '../../data/tmp/tables/sbem-6dpf-1-whole-segmented-cells-labels/regions.csv'
+    table = pd.read_csv(t, sep='\t')
+    label_ids = table['label_id'].values
+    head_ids = table['head'].values
+    head_ids = label_ids[head_ids == 1]
+
+    p1 = '../../data/0.1.1/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.h5'
+    p2 = '../../data/rawdata/prospr-6dpf-1-whole-segmented-Head.h5'
+
+    with h5py.File(p1, 'r') as f:
+        ds = f['t00000/s00/4/cells']
+        seg = ds[:]
+
+    with h5py.File(p2, 'r') as f:
+        ds = f['t00000/s00/0/cells']
+        head = ds[:]
+
+    shape = head.shape
+    seg = vigra.sampling.resize(seg.astype('float32'), shape, order=0).astype('uint32')
+    head_mask = np.isin(seg, head_ids).astype('uint32')
+
+    view([head, head_mask, seg])
+
+
+if __name__ == '__main__':
+    check_region_mapping()

update_platy_browser.py

@@ -215,10 +215,10 @@ def update_platy_browser(update_cell_segmentation=False,
     new_folder = os.path.join('data', new_tag)
     make_folder_structure(new_folder)
 
-    # target = 'slurm'
-    # max_jobs = 250
-    target = 'local'
-    max_jobs = 48
+    target = 'slurm'
+    max_jobs = 250
+    # target = 'local'
+    # max_jobs = 48
 
     # copy static image and misc data
     copy_image_data(os.path.join(folder, 'images'),