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Kimberly Isobel Meechan
platy-browser-data
Commits
85c5fc38
Commit
85c5fc38
authored
5 years ago
by
Constantin Pape
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Update bdv server script
parent
d2e267fa
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data/0.2.1/misc/bdv_server.txt
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data/0.2.1/misc/bdv_server.txt
scripts/files/bdv_server.py
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-4
6 additions, 4 deletions
scripts/files/bdv_server.py
update_platy_browser.py
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-1
5 additions, 1 deletion
update_platy_browser.py
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229 additions
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5 deletions
data/0.2.1/misc/bdv_server.txt
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85c5fc38
sbem-6dpf-1-whole-raw ../images/sbem-6dpf-1-whole-raw.xml
prospr-6dpf-1-whole-Glt1-MED ../images/prospr-6dpf-1-whole-Glt1-MED.xml
prospr-6dpf-1-whole-AChE-MED ../images/prospr-6dpf-1-whole-AChE-MED.xml
prospr-6dpf-1-whole-ANPRA-MED ../images/prospr-6dpf-1-whole-ANPRA-MED.xml
prospr-6dpf-1-whole-ANPRB-MED ../images/prospr-6dpf-1-whole-ANPRB-MED.xml
prospr-6dpf-1-whole-AP2-MED ../images/prospr-6dpf-1-whole-AP2-MED.xml
prospr-6dpf-1-whole-ASCb-MED ../images/prospr-6dpf-1-whole-ASCb-MED.xml
prospr-6dpf-1-whole-AcTub-MED ../images/prospr-6dpf-1-whole-AcTub-MED.xml
prospr-6dpf-1-whole-AllCR1-MED ../images/prospr-6dpf-1-whole-AllCR1-MED.xml
prospr-6dpf-1-whole-AllCR2-MED ../images/prospr-6dpf-1-whole-AllCR2-MED.xml
prospr-6dpf-1-whole-Arx-MED ../images/prospr-6dpf-1-whole-Arx-MED.xml
prospr-6dpf-1-whole-Ash-MED ../images/prospr-6dpf-1-whole-Ash-MED.xml
prospr-6dpf-1-whole-BAIAP-MED ../images/prospr-6dpf-1-whole-BAIAP-MED.xml
prospr-6dpf-1-whole-BarH1-MED ../images/prospr-6dpf-1-whole-BarH1-MED.xml
prospr-6dpf-1-whole-Beta3-MED ../images/prospr-6dpf-1-whole-Beta3-MED.xml
prospr-6dpf-1-whole-Bmpr1-MED ../images/prospr-6dpf-1-whole-Bmpr1-MED.xml
prospr-6dpf-1-whole-Brn3a-MED ../images/prospr-6dpf-1-whole-Brn3a-MED.xml
prospr-6dpf-1-whole-COE-MED ../images/prospr-6dpf-1-whole-COE-MED.xml
prospr-6dpf-1-whole-Cal2-MED ../images/prospr-6dpf-1-whole-Cal2-MED.xml
prospr-6dpf-1-whole-Calmodulin-MED ../images/prospr-6dpf-1-whole-Calmodulin-MED.xml
prospr-6dpf-1-whole-ChAT-MED ../images/prospr-6dpf-1-whole-ChAT-MED.xml
prospr-6dpf-1-whole-Chx10-MED ../images/prospr-6dpf-1-whole-Chx10-MED.xml
prospr-6dpf-1-whole-Dach-MED ../images/prospr-6dpf-1-whole-Dach-MED.xml
prospr-6dpf-1-whole-DbhLike-MED ../images/prospr-6dpf-1-whole-DbhLike-MED.xml
prospr-6dpf-1-whole-DopaRD2-MED ../images/prospr-6dpf-1-whole-DopaRD2-MED.xml
prospr-6dpf-1-whole-ENR1-MED ../images/prospr-6dpf-1-whole-ENR1-MED.xml
prospr-6dpf-1-whole-ENR10-MED ../images/prospr-6dpf-1-whole-ENR10-MED.xml
prospr-6dpf-1-whole-ENR12-MED ../images/prospr-6dpf-1-whole-ENR12-MED.xml
prospr-6dpf-1-whole-ENR13-MED ../images/prospr-6dpf-1-whole-ENR13-MED.xml
prospr-6dpf-1-whole-ENR16-MED ../images/prospr-6dpf-1-whole-ENR16-MED.xml
prospr-6dpf-1-whole-ENR19-MED ../images/prospr-6dpf-1-whole-ENR19-MED.xml
prospr-6dpf-1-whole-ENR2-MED ../images/prospr-6dpf-1-whole-ENR2-MED.xml
prospr-6dpf-1-whole-ENR20-MED ../images/prospr-6dpf-1-whole-ENR20-MED.xml
prospr-6dpf-1-whole-ENR22-MED ../images/prospr-6dpf-1-whole-ENR22-MED.xml
prospr-6dpf-1-whole-ENR25-MED ../images/prospr-6dpf-1-whole-ENR25-MED.xml
prospr-6dpf-1-whole-ENR29-MED ../images/prospr-6dpf-1-whole-ENR29-MED.xml
prospr-6dpf-1-whole-ENR3-MED ../images/prospr-6dpf-1-whole-ENR3-MED.xml
prospr-6dpf-1-whole-ENR30-MED ../images/prospr-6dpf-1-whole-ENR30-MED.xml
prospr-6dpf-1-whole-ENR31-MED ../images/prospr-6dpf-1-whole-ENR31-MED.xml
prospr-6dpf-1-whole-ENR32-MED ../images/prospr-6dpf-1-whole-ENR32-MED.xml
prospr-6dpf-1-whole-ENR34-MED ../images/prospr-6dpf-1-whole-ENR34-MED.xml
prospr-6dpf-1-whole-ENR39-MED ../images/prospr-6dpf-1-whole-ENR39-MED.xml
prospr-6dpf-1-whole-ENR4-MED ../images/prospr-6dpf-1-whole-ENR4-MED.xml
prospr-6dpf-1-whole-ENR46-MED ../images/prospr-6dpf-1-whole-ENR46-MED.xml
prospr-6dpf-1-whole-ENR54-MED ../images/prospr-6dpf-1-whole-ENR54-MED.xml
prospr-6dpf-1-whole-ENR57-MED ../images/prospr-6dpf-1-whole-ENR57-MED.xml
prospr-6dpf-1-whole-ENR6-MED ../images/prospr-6dpf-1-whole-ENR6-MED.xml
prospr-6dpf-1-whole-ENR62-MED ../images/prospr-6dpf-1-whole-ENR62-MED.xml
prospr-6dpf-1-whole-ENR64-MED ../images/prospr-6dpf-1-whole-ENR64-MED.xml
prospr-6dpf-1-whole-ENR69-MED ../images/prospr-6dpf-1-whole-ENR69-MED.xml
prospr-6dpf-1-whole-ENR71-MED ../images/prospr-6dpf-1-whole-ENR71-MED.xml
prospr-6dpf-1-whole-ENR8-MED ../images/prospr-6dpf-1-whole-ENR8-MED.xml
prospr-6dpf-1-whole-ENR9-MED ../images/prospr-6dpf-1-whole-ENR9-MED.xml
prospr-6dpf-1-whole-ElaV-MED ../images/prospr-6dpf-1-whole-ElaV-MED.xml
prospr-6dpf-1-whole-FOR-MED ../images/prospr-6dpf-1-whole-FOR-MED.xml
prospr-6dpf-1-whole-FVRI-MED ../images/prospr-6dpf-1-whole-FVRI-MED.xml
prospr-6dpf-1-whole-FoxD3-MED ../images/prospr-6dpf-1-whole-FoxD3-MED.xml
prospr-6dpf-1-whole-FoxN4-MED ../images/prospr-6dpf-1-whole-FoxN4-MED.xml
prospr-6dpf-1-whole-GAD-MED ../images/prospr-6dpf-1-whole-GAD-MED.xml
prospr-6dpf-1-whole-GCB-MED ../images/prospr-6dpf-1-whole-GCB-MED.xml
prospr-6dpf-1-whole-GCD-MED ../images/prospr-6dpf-1-whole-GCD-MED.xml
prospr-6dpf-1-whole-GPCR2-MED ../images/prospr-6dpf-1-whole-GPCR2-MED.xml
prospr-6dpf-1-whole-GPCR203-MED ../images/prospr-6dpf-1-whole-GPCR203-MED.xml
prospr-6dpf-1-whole-GPCR209-MED ../images/prospr-6dpf-1-whole-GPCR209-MED.xml
prospr-6dpf-1-whole-GPCR210-MED ../images/prospr-6dpf-1-whole-GPCR210-MED.xml
prospr-6dpf-1-whole-GPCR32-MED ../images/prospr-6dpf-1-whole-GPCR32-MED.xml
prospr-6dpf-1-whole-GPPCR21-MED ../images/prospr-6dpf-1-whole-GPPCR21-MED.xml
prospr-6dpf-1-whole-Gata123-MED ../images/prospr-6dpf-1-whole-Gata123-MED.xml
prospr-6dpf-1-whole-GlyT-MED ../images/prospr-6dpf-1-whole-GlyT-MED.xml
prospr-6dpf-1-whole-GnRH-MED ../images/prospr-6dpf-1-whole-GnRH-MED.xml
prospr-6dpf-1-whole-GnrhR-MED ../images/prospr-6dpf-1-whole-GnrhR-MED.xml
prospr-6dpf-1-whole-Grm7-MED ../images/prospr-6dpf-1-whole-Grm7-MED.xml
prospr-6dpf-1-whole-Gucy-MED ../images/prospr-6dpf-1-whole-Gucy-MED.xml
prospr-6dpf-1-whole-HCN1-MED ../images/prospr-6dpf-1-whole-HCN1-MED.xml
prospr-6dpf-1-whole-HNF6-MED ../images/prospr-6dpf-1-whole-HNF6-MED.xml
prospr-6dpf-1-whole-Hand-MED ../images/prospr-6dpf-1-whole-Hand-MED.xml
prospr-6dpf-1-whole-Hb9-MED ../images/prospr-6dpf-1-whole-Hb9-MED.xml
prospr-6dpf-1-whole-Hox5-MED ../images/prospr-6dpf-1-whole-Hox5-MED.xml
prospr-6dpf-1-whole-Hox7-MED ../images/prospr-6dpf-1-whole-Hox7-MED.xml
prospr-6dpf-1-whole-Hr38-MED ../images/prospr-6dpf-1-whole-Hr38-MED.xml
prospr-6dpf-1-whole-Isl-MED ../images/prospr-6dpf-1-whole-Isl-MED.xml
prospr-6dpf-1-whole-Kv33b-MED ../images/prospr-6dpf-1-whole-Kv33b-MED.xml
prospr-6dpf-1-whole-Kv33e-MED ../images/prospr-6dpf-1-whole-Kv33e-MED.xml
prospr-6dpf-1-whole-Lhx15-MED ../images/prospr-6dpf-1-whole-Lhx15-MED.xml
prospr-6dpf-1-whole-Lhx2-MED ../images/prospr-6dpf-1-whole-Lhx2-MED.xml
prospr-6dpf-1-whole-Lhx3-MED ../images/prospr-6dpf-1-whole-Lhx3-MED.xml
prospr-6dpf-1-whole-Lmo4-MED ../images/prospr-6dpf-1-whole-Lmo4-MED.xml
prospr-6dpf-1-whole-Lmx1-MED ../images/prospr-6dpf-1-whole-Lmx1-MED.xml
prospr-6dpf-1-whole-Loc28250-MED ../images/prospr-6dpf-1-whole-Loc28250-MED.xml
prospr-6dpf-1-whole-Loc5285ct-MED ../images/prospr-6dpf-1-whole-Loc5285ct-MED.xml
prospr-6dpf-1-whole-Loc77859-MED ../images/prospr-6dpf-1-whole-Loc77859-MED.xml
prospr-6dpf-1-whole-Loc8913nt-MED ../images/prospr-6dpf-1-whole-Loc8913nt-MED.xml
prospr-6dpf-1-whole-MHCL4-MED ../images/prospr-6dpf-1-whole-MHCL4-MED.xml
prospr-6dpf-1-whole-MRLC2-MED ../images/prospr-6dpf-1-whole-MRLC2-MED.xml
prospr-6dpf-1-whole-Maf-MED ../images/prospr-6dpf-1-whole-Maf-MED.xml
prospr-6dpf-1-whole-Mitf-MED ../images/prospr-6dpf-1-whole-Mitf-MED.xml
prospr-6dpf-1-whole-Munc22-MED ../images/prospr-6dpf-1-whole-Munc22-MED.xml
prospr-6dpf-1-whole-NMDAR-MED ../images/prospr-6dpf-1-whole-NMDAR-MED.xml
prospr-6dpf-1-whole-NOV1-MED ../images/prospr-6dpf-1-whole-NOV1-MED.xml
prospr-6dpf-1-whole-NOV15-MED ../images/prospr-6dpf-1-whole-NOV15-MED.xml
prospr-6dpf-1-whole-NOV18-MED ../images/prospr-6dpf-1-whole-NOV18-MED.xml
prospr-6dpf-1-whole-NOV2-MED ../images/prospr-6dpf-1-whole-NOV2-MED.xml
prospr-6dpf-1-whole-NOV29-MED ../images/prospr-6dpf-1-whole-NOV29-MED.xml
prospr-6dpf-1-whole-NOV45-MED ../images/prospr-6dpf-1-whole-NOV45-MED.xml
prospr-6dpf-1-whole-NOV50-MED ../images/prospr-6dpf-1-whole-NOV50-MED.xml
prospr-6dpf-1-whole-NOV52-MED ../images/prospr-6dpf-1-whole-NOV52-MED.xml
prospr-6dpf-1-whole-NOV6-MED ../images/prospr-6dpf-1-whole-NOV6-MED.xml
prospr-6dpf-1-whole-NPR1a-MED ../images/prospr-6dpf-1-whole-NPR1a-MED.xml
prospr-6dpf-1-whole-Netrin-MED ../images/prospr-6dpf-1-whole-Netrin-MED.xml
prospr-6dpf-1-whole-NeuroD-MED ../images/prospr-6dpf-1-whole-NeuroD-MED.xml
prospr-6dpf-1-whole-Ngb-MED ../images/prospr-6dpf-1-whole-Ngb-MED.xml
prospr-6dpf-1-whole-Olig-MED ../images/prospr-6dpf-1-whole-Olig-MED.xml
prospr-6dpf-1-whole-P56-MED ../images/prospr-6dpf-1-whole-P56-MED.xml
prospr-6dpf-1-whole-PCDH15-MED ../images/prospr-6dpf-1-whole-PCDH15-MED.xml
prospr-6dpf-1-whole-PDF-MED ../images/prospr-6dpf-1-whole-PDF-MED.xml
prospr-6dpf-1-whole-PLCg-MED ../images/prospr-6dpf-1-whole-PLCg-MED.xml
prospr-6dpf-1-whole-Pax258-MED ../images/prospr-6dpf-1-whole-Pax258-MED.xml
prospr-6dpf-1-whole-Pax6-MED ../images/prospr-6dpf-1-whole-Pax6-MED.xml
prospr-6dpf-1-whole-Pde9-MED ../images/prospr-6dpf-1-whole-Pde9-MED.xml
prospr-6dpf-1-whole-Pea3-MED ../images/prospr-6dpf-1-whole-Pea3-MED.xml
prospr-6dpf-1-whole-Phc2-MED ../images/prospr-6dpf-1-whole-Phc2-MED.xml
prospr-6dpf-1-whole-Phox2b-MED ../images/prospr-6dpf-1-whole-Phox2b-MED.xml
prospr-6dpf-1-whole-Pikachu-MED ../images/prospr-6dpf-1-whole-Pikachu-MED.xml
prospr-6dpf-1-whole-PitxB-MED ../images/prospr-6dpf-1-whole-PitxB-MED.xml
prospr-6dpf-1-whole-Prdm8-MED ../images/prospr-6dpf-1-whole-Prdm8-MED.xml
prospr-6dpf-1-whole-Prox-MED ../images/prospr-6dpf-1-whole-Prox-MED.xml
prospr-6dpf-1-whole-Ptf1-MED ../images/prospr-6dpf-1-whole-Ptf1-MED.xml
prospr-6dpf-1-whole-Pty2-MED ../images/prospr-6dpf-1-whole-Pty2-MED.xml
prospr-6dpf-1-whole-RIMS-MED ../images/prospr-6dpf-1-whole-RIMS-MED.xml
prospr-6dpf-1-whole-Rab3-MED ../images/prospr-6dpf-1-whole-Rab3-MED.xml
prospr-6dpf-1-whole-Robo-MED ../images/prospr-6dpf-1-whole-Robo-MED.xml
prospr-6dpf-1-whole-Scn8aa-MED ../images/prospr-6dpf-1-whole-Scn8aa-MED.xml
prospr-6dpf-1-whole-Sema2-MED ../images/prospr-6dpf-1-whole-Sema2-MED.xml
prospr-6dpf-1-whole-Sim1-MED ../images/prospr-6dpf-1-whole-Sim1-MED.xml
prospr-6dpf-1-whole-Slit-MED ../images/prospr-6dpf-1-whole-Slit-MED.xml
prospr-6dpf-1-whole-Sox2-MED ../images/prospr-6dpf-1-whole-Sox2-MED.xml
prospr-6dpf-1-whole-Sox4-MED ../images/prospr-6dpf-1-whole-Sox4-MED.xml
prospr-6dpf-1-whole-SoxB12-MED ../images/prospr-6dpf-1-whole-SoxB12-MED.xml
prospr-6dpf-1-whole-SoxB2-MED ../images/prospr-6dpf-1-whole-SoxB2-MED.xml
prospr-6dpf-1-whole-Sp8-MED ../images/prospr-6dpf-1-whole-Sp8-MED.xml
prospr-6dpf-1-whole-Syt-MED ../images/prospr-6dpf-1-whole-Syt-MED.xml
prospr-6dpf-1-whole-Syt12-MED ../images/prospr-6dpf-1-whole-Syt12-MED.xml
prospr-6dpf-1-whole-Syt7-MED ../images/prospr-6dpf-1-whole-Syt7-MED.xml
prospr-6dpf-1-whole-Syta-MED ../images/prospr-6dpf-1-whole-Syta-MED.xml
prospr-6dpf-1-whole-TH-MED ../images/prospr-6dpf-1-whole-TH-MED.xml
prospr-6dpf-1-whole-TIMP-MED ../images/prospr-6dpf-1-whole-TIMP-MED.xml
prospr-6dpf-1-whole-TRPV4-MED ../images/prospr-6dpf-1-whole-TRPV4-MED.xml
prospr-6dpf-1-whole-TRPV5-MED ../images/prospr-6dpf-1-whole-TRPV5-MED.xml
prospr-6dpf-1-whole-Tal-MED ../images/prospr-6dpf-1-whole-Tal-MED.xml
prospr-6dpf-1-whole-Tbh-MED ../images/prospr-6dpf-1-whole-Tbh-MED.xml
prospr-6dpf-1-whole-Tbx20-MED ../images/prospr-6dpf-1-whole-Tbx20-MED.xml
prospr-6dpf-1-whole-TrpH-MED ../images/prospr-6dpf-1-whole-TrpH-MED.xml
prospr-6dpf-1-whole-TrpV-MED ../images/prospr-6dpf-1-whole-TrpV-MED.xml
prospr-6dpf-1-whole-Twist-MED ../images/prospr-6dpf-1-whole-Twist-MED.xml
prospr-6dpf-1-whole-UNCS-MED ../images/prospr-6dpf-1-whole-UNCS-MED.xml
prospr-6dpf-1-whole-VAChT-MED ../images/prospr-6dpf-1-whole-VAChT-MED.xml
prospr-6dpf-1-whole-VAT1L-MED ../images/prospr-6dpf-1-whole-VAT1L-MED.xml
prospr-6dpf-1-whole-VGluT-MED ../images/prospr-6dpf-1-whole-VGluT-MED.xml
prospr-6dpf-1-whole-VegfR-MED ../images/prospr-6dpf-1-whole-VegfR-MED.xml
prospr-6dpf-1-whole-Wnt16-MED ../images/prospr-6dpf-1-whole-Wnt16-MED.xml
prospr-6dpf-1-whole-Wnt5-MED ../images/prospr-6dpf-1-whole-Wnt5-MED.xml
prospr-6dpf-1-whole-ascI-MED ../images/prospr-6dpf-1-whole-ascI-MED.xml
prospr-6dpf-1-whole-ascII-MED ../images/prospr-6dpf-1-whole-ascII-MED.xml
prospr-6dpf-1-whole-asicalpha-MED ../images/prospr-6dpf-1-whole-asicalpha-MED.xml
prospr-6dpf-1-whole-bsx-MED ../images/prospr-6dpf-1-whole-bsx-MED.xml
prospr-6dpf-1-whole-catL-MED ../images/prospr-6dpf-1-whole-catL-MED.xml
prospr-6dpf-1-whole-cnga-MED ../images/prospr-6dpf-1-whole-cnga-MED.xml
prospr-6dpf-1-whole-dbx1-MED ../images/prospr-6dpf-1-whole-dbx1-MED.xml
prospr-6dpf-1-whole-delta-MED ../images/prospr-6dpf-1-whole-delta-MED.xml
prospr-6dpf-1-whole-dlx-MED ../images/prospr-6dpf-1-whole-dlx-MED.xml
prospr-6dpf-1-whole-edu3to4at6dpf-MED ../images/prospr-6dpf-1-whole-edu3to4at6dpf-MED.xml
prospr-6dpf-1-whole-edu4to5at6dpf-MED ../images/prospr-6dpf-1-whole-edu4to5at6dpf-MED.xml
prospr-6dpf-1-whole-edu5to6at6dpf-MED ../images/prospr-6dpf-1-whole-edu5to6at6dpf-MED.xml
prospr-6dpf-1-whole-eve-MED ../images/prospr-6dpf-1-whole-eve-MED.xml
prospr-6dpf-1-whole-eya-MED ../images/prospr-6dpf-1-whole-eya-MED.xml
prospr-6dpf-1-whole-fezf-MED ../images/prospr-6dpf-1-whole-fezf-MED.xml
prospr-6dpf-1-whole-gpb-MED ../images/prospr-6dpf-1-whole-gpb-MED.xml
prospr-6dpf-1-whole-gsx-MED ../images/prospr-6dpf-1-whole-gsx-MED.xml
prospr-6dpf-1-whole-hox1-MED ../images/prospr-6dpf-1-whole-hox1-MED.xml
prospr-6dpf-1-whole-irx-MED ../images/prospr-6dpf-1-whole-irx-MED.xml
prospr-6dpf-1-whole-irx2546-MED ../images/prospr-6dpf-1-whole-irx2546-MED.xml
prospr-6dpf-1-whole-lbx1b-MED ../images/prospr-6dpf-1-whole-lbx1b-MED.xml
prospr-6dpf-1-whole-lhx6-MED ../images/prospr-6dpf-1-whole-lhx6-MED.xml
prospr-6dpf-1-whole-mecom-MED ../images/prospr-6dpf-1-whole-mecom-MED.xml
prospr-6dpf-1-whole-msx-MED ../images/prospr-6dpf-1-whole-msx-MED.xml
prospr-6dpf-1-whole-muncB-MED ../images/prospr-6dpf-1-whole-muncB-MED.xml
prospr-6dpf-1-whole-nAchR-MED ../images/prospr-6dpf-1-whole-nAchR-MED.xml
prospr-6dpf-1-whole-neog-MED ../images/prospr-6dpf-1-whole-neog-MED.xml
prospr-6dpf-1-whole-ngn-MED ../images/prospr-6dpf-1-whole-ngn-MED.xml
prospr-6dpf-1-whole-nk21-MED ../images/prospr-6dpf-1-whole-nk21-MED.xml
prospr-6dpf-1-whole-nk22-MED ../images/prospr-6dpf-1-whole-nk22-MED.xml
prospr-6dpf-1-whole-nk6-MED ../images/prospr-6dpf-1-whole-nk6-MED.xml
prospr-6dpf-1-whole-ntrps-MED ../images/prospr-6dpf-1-whole-ntrps-MED.xml
prospr-6dpf-1-whole-otp-MED ../images/prospr-6dpf-1-whole-otp-MED.xml
prospr-6dpf-1-whole-paraxis-MED ../images/prospr-6dpf-1-whole-paraxis-MED.xml
prospr-6dpf-1-whole-rx-MED ../images/prospr-6dpf-1-whole-rx-MED.xml
prospr-6dpf-1-whole-sert-MED ../images/prospr-6dpf-1-whole-sert-MED.xml
prospr-6dpf-1-whole-six12-MED ../images/prospr-6dpf-1-whole-six12-MED.xml
prospr-6dpf-1-whole-six4-MED ../images/prospr-6dpf-1-whole-six4-MED.xml
prospr-6dpf-1-whole-tlx-MED ../images/prospr-6dpf-1-whole-tlx-MED.xml
prospr-6dpf-1-whole-trk-MED ../images/prospr-6dpf-1-whole-trk-MED.xml
prospr-6dpf-1-whole-uncx-MED ../images/prospr-6dpf-1-whole-uncx-MED.xml
prospr-6dpf-1-whole-segmented-CrypticSegment ../images/prospr-6dpf-1-whole-segmented-CrypticSegment.xml
prospr-6dpf-1-whole-segmented-PNS ../images/prospr-6dpf-1-whole-segmented-PNS.xml
prospr-6dpf-1-whole-segmented-Head ../images/prospr-6dpf-1-whole-segmented-Head.xml
prospr-6dpf-1-whole-segmented-Pygidium ../images/prospr-6dpf-1-whole-segmented-Pygidium.xml
prospr-6dpf-1-whole-segmented-RestOfAnimal ../images/prospr-6dpf-1-whole-segmented-RestOfAnimal.xml
prospr-6dpf-1-whole-segmented-Stomodeum ../images/prospr-6dpf-1-whole-segmented-Stomodeum.xml
prospr-6dpf-1-whole-segmented-VNC ../images/prospr-6dpf-1-whole-segmented-VNC.xml
prospr-6dpf-1-whole-Ref-SPM ../images/prospr-6dpf-1-whole-Ref-SPM.xml
sbem-6dpf-1-whole-segmented-cells-labels ../segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml
sbem-6dpf-1-whole-segmented-nuclei-labels ../segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml
sbem-6dpf-1-whole-segmented-cilia-labels ../segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.xml
sbem-6dpf-1-whole-segmented-muscles ../segmentations/sbem-6dpf-1-whole-segmented-muscles.xml
sbem-6dpf-1-whole-segmented-tissue-labels ../segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml
sbem-6dpf-1-whole-segmented-chromatin-labels ../segmentations/sbem-6dpf-1-whole-segmented-chromatin-labels.xml
prospr-6dpf-1-whole-segmented-cats-Neuropil ../segmentations/prospr-6dpf-1-whole-segmented-cats-Neuropil.xml
prospr-6dpf-1-whole-segmented-aridane-Neuropil ../segmentations/prospr-6dpf-1-whole-segmented-aridane-Neuropil.xml
This diff is collapsed.
Click to expand it.
scripts/files/bdv_server.py
+
6
−
4
View file @
85c5fc38
...
@@ -2,13 +2,13 @@ import os
...
@@ -2,13 +2,13 @@ import os
from
.xml_utils
import
get_h5_path_from_xml
from
.xml_utils
import
get_h5_path_from_xml
# TODO enable filtering for files by some patter
.
# TODO enable filtering for files by some patter
n
# e.g. if we don't want to expose the fib dataset to the public yet
# e.g. if we don't want to expose the fib dataset to the public yet
def
make_bdv_server_file
(
folders
,
out_path
):
def
make_bdv_server_file
(
folders
,
out_path
,
relative_paths
=
True
):
"""
Make the bigserver config file from
"""
Make the bigserver config file from all xmls in folders.
all xmls in folders.
"""
"""
file_list
=
{}
file_list
=
{}
ref_dir
=
os
.
path
.
split
(
out_path
)[
0
]
for
folder
in
folders
:
for
folder
in
folders
:
files
=
os
.
listdir
(
folder
)
files
=
os
.
listdir
(
folder
)
for
ff
in
files
:
for
ff
in
files
:
...
@@ -27,6 +27,8 @@ def make_bdv_server_file(folders, out_path):
...
@@ -27,6 +27,8 @@ def make_bdv_server_file(folders, out_path):
return
RuntimeError
(
msg
)
return
RuntimeError
(
msg
)
name
=
os
.
path
.
splitext
(
ff
)[
0
]
name
=
os
.
path
.
splitext
(
ff
)[
0
]
if
relative_paths
:
path
=
os
.
path
.
relpath
(
path
,
ref_dir
)
file_list
[
name
]
=
path
file_list
[
name
]
=
path
with
open
(
out_path
,
'
w
'
)
as
f
:
with
open
(
out_path
,
'
w
'
)
as
f
:
...
...
This diff is collapsed.
Click to expand it.
update_platy_browser.py
+
5
−
1
View file @
85c5fc38
...
@@ -7,7 +7,7 @@ from shutil import rmtree
...
@@ -7,7 +7,7 @@ from shutil import rmtree
from
scripts.attributes
import
make_cell_tables
,
make_nucleus_tables
,
make_cilia_tables
from
scripts.attributes
import
make_cell_tables
,
make_nucleus_tables
,
make_cilia_tables
from
scripts.export
import
export_segmentation
from
scripts.export
import
export_segmentation
from
scripts.files
import
copy_image_data
,
copy_misc_data
from
scripts.files
import
copy_image_data
,
copy_misc_data
,
make_bdv_server_file
from
scripts.files
import
copy_tables
,
copy_segmentation
,
make_folder_structure
from
scripts.files
import
copy_tables
,
copy_segmentation
,
make_folder_structure
...
@@ -247,6 +247,10 @@ def update_platy_browser(update_cell_segmentation=False,
...
@@ -247,6 +247,10 @@ def update_platy_browser(update_cell_segmentation=False,
update_cilia_tables
,
update_cilia_tables
,
target
=
target
,
max_jobs
=
max_jobs
)
target
=
target
,
max_jobs
=
max_jobs
)
make_bdv_server_file
([
os
.
path
.
join
(
new_folder
,
'
images
'
),
os
.
path
.
join
(
new_folder
,
'
segmentations
'
)],
os
.
path
.
join
(
new_folder
,
'
misc
'
,
'
bdv_server.txt
'
),
relative_paths
=
True
)
# TODO add some quality control that cheks that all files are there
# TODO add some quality control that cheks that all files are there
# TODO implement make release properly
# TODO implement make release properly
...
...
This diff is collapsed.
Click to expand it.
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