comments only

extensions/chaeo/examples/batch_run_patches.py

@@ -27,6 +27,8 @@ if __name__ == '__main__':
     csv_args = {'mode': 'w', 'header': True} # when creating file
     px_ilp = Path.home() / 'model-server' / 'ilastik' / 'AF405-bodies_boundaries.ilp'
 
+    # TODO: try/catch blocks and error handling around workflow calls
+    # TODO: pack JSON-serializable workflow inputs
     for ff in where_czi.iterdir():
         pattern = 'Selection--W([\d]+)--P([\d]+)-T([\d]+)'
         ma = re.match(pattern, ff.stem)

extensions/chaeo/workflows.py

@@ -8,6 +8,7 @@ from extensions.chaeo.zmask import build_zmask_from_object_mask, project_stack_f
 from model_server.accessors import generate_file_accessor, InMemoryDataAccessor, write_accessor_data_to_file
 from model_server.workflows import Timer
 
+# TODO: unpack and validate inputs
 def export_patches_from_multichannel_zstack(
         input_zstack_path: str,
         ilastik_project_file: str,