Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
M
model_server
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Package Registry
Container Registry
Model registry
Operate
Environments
Terraform modules
Monitor
Incidents
Service Desk
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Christopher Randolph Rhodes
model_server
Commits
c712a665
Commit
c712a665
authored
1 year ago
by
Christopher Randolph Rhodes
Browse files
Options
Downloads
Patches
Plain Diff
Still working to decode model_id and run inference in ImageJ Jython environment
parent
30c94dd4
No related branches found
Branches containing commit
No related tags found
Tags containing commit
No related merge requests found
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
imagej/infer_ilastik_by_api.py
+50
-0
50 additions, 0 deletions
imagej/infer_ilastik_by_api.py
with
50 additions
and
0 deletions
imagej/infer_ilastik_by_api.py
0 → 100644
+
50
−
0
View file @
c712a665
import
httplib
import
urllib2
import
json
import
urllib
import
os
import
sys
print
(
sys
.
version
)
from
ij
import
IJ
host
=
'
127.0.0.1
'
port
=
8001
uri
=
'
http://{}:{}/
'
.
format
(
host
,
port
)
abspath
=
IJ
.
getImage
().
getProp
(
'
Location
'
)
input_filename
=
os
.
path
.
split
(
abspath
)[
-
1
]
outpath
=
'
C:
\\
Users
\\
rhodes
\\
projects
\\
proj0015-model-server
\\
resources
\\
testdata
'
global
connection
connection
=
httplib
.
HTTPConnection
(
'
127.0.0.1
'
,
8001
)
def
hit_endpoint
(
method
,
endpoint
,
params
=
None
):
if
not
method
in
[
'
GET
'
,
'
PUT
'
]:
raise
Exception
(
'
Can only handle GET and PUT requests
'
)
if
params
:
url
=
endpoint
+
'
?
'
+
urllib
.
urlencode
(
params
)
else
:
url
=
endpoint
connection
.
request
(
method
,
url
)
resp
=
connection
.
getresponse
()
print
(
method
+
'
'
+
url
+
'
, status
'
+
str
(
resp
.
status
)
+
'
:
\n
'
+
str
(
json
.
loads
(
resp
.
read
())))
return
resp
hit_endpoint
(
'
GET
'
,
'
/
'
)
hit_endpoint
(
'
GET
'
,
'
/models
'
)
hit_endpoint
(
'
PUT
'
,
'
/bounce_back
'
,
{
'
par1
'
:
'
ghij
'
})
hit_endpoint
(
'
PUT
'
,
'
/models/ilastik/pixel_classification/load/
'
,
{
'
project_file
'
:
'
demo_px.ilp
'
})
resp
=
hit_endpoint
(
'
GET
'
,
'
/models
'
)
print
(
resp
.
read
())
#print(json.loads(resp.read())) # trying to extract model_id, but json.loads throws an error
#infer_params = {
# 'model_id': model_id,
# 'input_filename': input_filename,
# 'channel': 0
# }
#
#hit_endpoint('PUT', '/infer/from_image_file', infer_params)
\ No newline at end of file
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment