Porto script is running mostly problem-free, except for TSV export at end

model_server/extensions/chaeo/old_batch_jobs/20231026_Porto.py → model_server/extensions/chaeo/batch_jobs/20231026_Porto.py

@@ -22,25 +22,8 @@ if __name__ == '__main__':
     ).__str__()
 
     params = {
-        # 'pxmap_threshold': 0.25,
-        # 'pxmap_foreground_channel': 0,
         'segmentation_channel': 0,
-        # 'zmask_zindex': None,
         'patches_channel': 2,
-        # 'zmask_type': 'boxes',
-        # 'zmask_filters': {'area': (1e3, 1e8)},
-        # 'zmask_expand_box_by': (128, 3),
-        # 'export_pixel_probabilities': True,
-        # 'export_2d_patches_for_training': True,
-        # 'draw_bounding_box_on_2d_patch': True,
-        # 'export_2d_patches_for_annotation': True,
-        # 'export_3d_patches': False,
-        # 'export_annotated_zstack': True,
-        # 'export_patch_masks': True,
-        # 'zmask_clip': 0.01,
-        # 'rgb_overlay_channels': (1, None, None),
-        # 'rgb_overlay_weights': (0.2, 1.0, 1.0),
-        # 'draw_label_on_zstack': True,
     }
 
     roi_params = RoiSetMetaParams(**{
@@ -62,11 +45,7 @@ if __name__ == '__main__':
         },
         'patches_2d': {
             'draw_bounding_box': False,
-            # 'draw_mask': False,
         },
-        # 'patch_masks': {
-        #     'pad_to': 256,
-        # },
         'annotated_zstacks': {},
         'object_classes': True,
         'dataframe': True,