- Apr 03, 2024
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Christopher Randolph Rhodes authored
Exporting patch masks does not automatically make a PatchStack, which forces them to all be the same size
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
By default, return non-expanded patches and masks; allow contour and mask overlays in non-expanded patches
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Christopher Randolph Rhodes authored
Standardize patch (mask) getters return ad-hoc DataFrames, and _acc methods wrap these in PatchStack accessors (which automatically become shape of largest patch)
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- Apr 02, 2024
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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- Mar 28, 2024
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
Removed solidity from features, this was no longer being used and was triggering convex hull warnings
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Christopher Randolph Rhodes authored
Implementing alternative dataframe generation where z-positions are in object map, i.e. do not need to be de-projected from raw
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Christopher Randolph Rhodes authored
Implemented and tested object identity labeling in 3D with and without connectivity between z-frames
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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- Mar 07, 2024
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Christopher Randolph Rhodes authored
record entry returned by object class map export is no longer a dictionary of paths, but rather one path for object map
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- Mar 04, 2024
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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- Feb 28, 2024
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Christopher Randolph Rhodes authored
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- Feb 19, 2024
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
Now that RoiSet is in base, remove dependency on ilastik in its test; tests now open segmentation mask from file
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Christopher Randolph Rhodes authored
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- Feb 07, 2024
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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- Feb 06, 2024
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Christopher Randolph Rhodes authored
Progress on testing classify_by method; need to pass preference of channel to patch generator without disrupting existing options to export RGB / multichannel stacks
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Christopher Randolph Rhodes authored
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Christopher Randolph Rhodes authored
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- Feb 05, 2024
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Christopher Randolph Rhodes authored
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