Updates for TREC pipelines
- Nov 02, 2024
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Christopher Randolph Rhodes authored1819a0f6
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Christopher Randolph Rhodes authoredbe6040f3
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- Nov 01, 2024
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Christopher Randolph Rhodes authored
IntensityThresholdInstanceMaskSegmentationModel enforces a mono image but itself is not initiated with a channel
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Christopher Randolph Rhodes authoredee2d250e
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Christopher Randolph Rhodes authoredce351a1b
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- Oct 31, 2024
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Christopher Randolph Rhodes authorede679bb17
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Christopher Randolph Rhodes authoreda67869dc
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Christopher Randolph Rhodes authoreda76604bc
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Christopher Randolph Rhodes authorede79f7a30
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Christopher Randolph Rhodes authored
Option to pass probability threshold to label_pixel_class method; model falls back on instance attribute if not supplied
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Christopher Randolph Rhodes authored7266637c
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Christopher Randolph Rhodes authored423afe65
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Christopher Randolph Rhodes authoreda851ef4a
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Christopher Randolph Rhodes authoredb5d80b38
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Christopher Randolph Rhodes authored
Simplified RoiSetWithDerivedChannels, now simply appends all derived channels in series. Test confirms that multichannel derived accessor is used.
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Christopher Randolph Rhodes authored
# Conflicts: # model_server/base/roiset.py
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Christopher Randolph Rhodes authoredcdcfe3d3
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Christopher Randolph Rhodes authored5df3f720
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Christopher Randolph Rhodes authored56848bba
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Christopher Randolph Rhodes authoredc038f5b1
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Christopher Randolph Rhodes authored7c03ce46
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Christopher Randolph Rhodes authored3a6fa831
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- Oct 30, 2024
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Christopher Randolph Rhodes authored18ace72f
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Christopher Randolph Rhodes authored
Ilastik pixel classifier calls batch mode for performance reasons; removed handling of ilastik.applets.featureSelection.opFeatureSelection.FeatureSelectionConstraintError; unsure if this remains a risk
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Christopher Randolph Rhodes authored50d37fc0
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Christopher Randolph Rhodes authored53d15e47
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Christopher Randolph Rhodes authored644b4e69
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Christopher Randolph Rhodes authored881f1fde
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Christopher Randolph Rhodes authored0f3f110c
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Christopher Randolph Rhodes authoredddbf2ab6
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Christopher Randolph Rhodes authoreda85d3d35
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Christopher Randolph Rhodes authoredc0c7200a
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Christopher Randolph Rhodes authoredf9f86211
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- Oct 28, 2024
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Christopher Randolph Rhodes authored623f707c
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Christopher Randolph Rhodes authoredf8e3dcb7
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Christopher Randolph Rhodes authored49e86683
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Christopher Randolph Rhodes authored
Instantiate models with keyword arguments now, no longer via "params" dictionary; although API still uses this name when passing Pydantic parameters models. API describes model via its info property now, which passes instance property, not its init arguments.
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Christopher Randolph Rhodes authored
Renamed some model classes; expanded scope of trivial object classification model to be functional base on intensity threshold, too
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- Oct 27, 2024
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Christopher Randolph Rhodes authorede894ba3f
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Christopher Randolph Rhodes authored204719f1
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Christopher Randolph Rhodes authored96d6e34f
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Christopher Randolph Rhodes authored1b66fc12
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Christopher Randolph Rhodes authored73251c71
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Christopher Randolph Rhodes authored6ad5df42
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Christopher Randolph Rhodes authored9a9132f4
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- Oct 26, 2024
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Christopher Randolph Rhodes authoredac54d6e0
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Christopher Randolph Rhodes authorede2624a9a
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Christopher Randolph Rhodes authored0f5e93cb
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Christopher Randolph Rhodes authored037231bc
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Christopher Randolph Rhodes authored9daeeb97
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Christopher Randolph Rhodes authored518f1df3
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- Oct 25, 2024
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Christopher Randolph Rhodes authored
Make requirements.yml match pyproject.toml, namely rolling back ilastik build and pinning protobuf, which causes issues in ilastik 1.4.1b15
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Christopher Randolph Rhodes authored4bf4224d
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Christopher Randolph Rhodes authored7928026e
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Christopher Randolph Rhodes authored4d28155b
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Christopher Randolph Rhodes authored83cbc10c
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Christopher Randolph Rhodes authored6469d4b4
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Christopher Randolph Rhodes authored9dfbc6ae
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Christopher Randolph Rhodes authored4b450723
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Christopher Randolph Rhodes authored327ff77b
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Christopher Randolph Rhodes authoredfc16982f
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Christopher Randolph Rhodes authoredefce29dc
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Christopher Randolph Rhodes authored04b4d523
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Christopher Randolph Rhodes authored0c2b54c0
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Christopher Randolph Rhodes authored82a1ca73
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Christopher Randolph Rhodes authored6a0505a4
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Christopher Randolph Rhodes authoreddae64e30
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Christopher Randolph Rhodes authored
Tests parameterize models directly with dicts, not pydantic models, which are reserved for API calls
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Christopher Randolph Rhodes authoredef31604c
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Christopher Randolph Rhodes authoredc7485174
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Christopher Randolph Rhodes authored61a1df22
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Christopher Randolph Rhodes authored
Incomplete, but replacing manual status code assertions with assertion methods of TestServerBaseClass
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Christopher Randolph Rhodes authoredfd85c3b4
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Christopher Randolph Rhodes authored608c3e95
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- Oct 20, 2024
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Christopher Randolph Rhodes authored
Removed model_id from Model objects, which in any case in managed by session. But tests aren't passing; need to investigate further.
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