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  • 29-deserialization-can-lead-to-disconnected-objects
  • 30-ilastik-model-classes-preclude-multiple-channels
  • 32-roiset-patch-exports-don-t-support-multiple-specified-channels
  • 36-roiset-creation-may-error-when-created-with-blank-label-map
  • 37-422-when-loading-ilastik-model-from-imagej-client
  • 38-imagej-client-is-forced-to-specify-a-single-channel
  • 48-pipeline-router-circular-import-error
  • 50-running-scripts-run_server-from-command-line-raises-errors
  • 64-long-compute-time-blocks-pipeline-requests
  • 7-composing-pipelines-can-be-convoluted-with-accessor-class
  • 73-batch-runner-scrambles-stack-index
  • 78-task-timer-results-in-batch-jobs
  • build-2024.06.03
  • build-2024.07.08
  • chaeo_pipeline
  • cluster-deploy
  • dev-proj0024-exp0005
  • dev_boundary_seg_pipeline
  • dev_conda_build
  • dev_patch_viz
  • 2025.02.01
  • 2024.11.01
  • 2024.10.01
  • 2024.06.03
  • 2024.04.19
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Created with Raphaël 2.2.05Aug2131Jul2624221817161585432124Jun22212010765330May2217876326Apr1917151211109543229Mar2825222176429Feb282019157653226Jan259822Dec21201914Nov1310763231Oct302726252220Fixed relative pathIn the middle of restoring dummy tests, now declared within testing modules themselvesStill some references to dummy models in testingCorrected some API testsRemoved many dummy tests; but still hitting errors in test_apiRemoved testing of dummy endpoints completelyPartial merge of dev_pipeline_refactorCorrected Gaussian smoothing in pixel mapCorrected Gaussian smoothing in pixel mapchaeo_pipelinechaeo_pipelineMerged in from stagingMerge branch 'staging' into chaeo_pipelineCheck pixel probability rangeOverlap tests pass; getting pandas warningfilter_df_overlap_bbox now includes both sides of an overlapping Roi pair as separate rowsfilter_df_overlap_bbox does not include "second" ROI in index so can be incompleteImplemented and tested creation of RoiSet from polygon coordinatesDocstring and assertion in polymer fitRemoved additional cases where accessor data was sliced directlyTest cover use .data_xy and .data_xyz propertiesAdded convenience property to get XYZ ndarray on mono arraysAdded convenience property to get XY ndarray on flattened, mono arraysImplemented polygon fittingMerge branch 'build-2024.07.26' into 'staging'Test build todayMerge branch 'staging' into dev_roiset_cocoMerge branch 'trec-adaptive-feedback-issue0014' into 'staging'Adopt relative path for server configurationValidation changes to make ilastik object classification argument optionalUntested create from Bounding boxesAdded docstringObject classification and object map creation are now separate functions; no longer persist object maps.Removed focal point projectionChanged names of static methodsTests pass, code is still uglyAccidentally not taking mask MIPNeed to standardize whether binary_mask is (Y, X, 1, 1) or (Y, X)Added Accessor method to handle YX croppingGenerally removing necessity of instantiating with a map of object IDsRenamed dataframe maker and moved derivative dataframe columns into separate methodRemoved image-flattening from focal points