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  • 29-deserialization-can-lead-to-disconnected-objects
  • 30-ilastik-model-classes-preclude-multiple-channels
  • 32-roiset-patch-exports-don-t-support-multiple-specified-channels
  • 36-roiset-creation-may-error-when-created-with-blank-label-map
  • 37-422-when-loading-ilastik-model-from-imagej-client
  • 38-imagej-client-is-forced-to-specify-a-single-channel
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  • 7-composing-pipelines-can-be-convoluted-with-accessor-class
  • 73-batch-runner-scrambles-stack-index
  • 78-task-timer-results-in-batch-jobs
  • build-2024.06.03
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  • chaeo_pipeline
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  • dev-proj0024-exp0005
  • dev_boundary_seg_pipeline
  • dev_conda_build
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  • 2025.02.01
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  • 2024.04.19
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Created with Raphaël 2.2.017May876326Apr1917151211109543229Mar2825222176429Feb282019157653226Jan259822Dec21201914Nov1310763231Oct30272625222019181716141312111098529Sep2827262513127654131Aug30292824Deleting workflows module; intent is to replace Session.Timer with PipelineTrace, which is not yet tested; also ilastik extension now has broken dependencyRefactored first workflow following pipelines standard, tests over API passMerge branch 'dev_connectivity_patch_obmaps' into 'staging'Specify connectivity of labelingAdded object method to write to and class method to read from fileMerge branch 'dev_allow_unpadded_patches' into 'staging'Allow None to certain int parametersMerge branch 'dev_ilastik_params_upon_loading' into 'staging'Expose gaussian blur in ilastik segmentation modelModels now generically use Pydyantic models for parameterizationilastik load endpoints now use Pydyantic modelsMoved project file into model.params; removed autogeneration of segmentation model from pixel predictions modelMerge branch 'dev_watershed_centroids' into 'staging'Added static constructor for making RoiSets from segmentation masksMerge branch 'dev_multichannel_ilastik' into 'staging'Removed in-progress RoiSet testilastik workflow now interprets channel=None to use all input channelsilastik workflow now interprets channel=None to use all input channelsilastik now allows multichannel inputsTest coverage of ilastik workflow and API endpoint that currently restricts multichannel inputsConfirms that ilastik pixel object already works with multichannel inputConfirms that ilastik pixel classification already works with multichannel inputRun pixel and object classification on ilastik projects' own inputsStable conversion to relpathsScript converts absolute paths to relative ones in ilastik project filesMerge branch 'master' into 'staging'Merge branch 'release-2024.04.19' into 'master'2024.04.19 32-r…2024.04.19 32-roiset-patch-exports-don-t-support-multiple-specified-channels 36-roiset-creation-may-error-when-created-with-blank-label-map 37-422-when-loading-ilastik-model-from-imagej-client 38-imagej-client-is-forced-to-specify-a-single-channel 7-composing-pipelines-can-be-convoluted-with-accessor-classRebuilding release branch to resolve conflicts where master is ahead of stagingMerge branch 'staging' into release-2024.04.19Merge branch 'dev_disable_convert_obj_model' into 'staging'Merge branch 'staging' into dev_disable_convert_obj_modelDisabled generation of ilastik object model that receives segmentation masks from one that receives pixel probabilities; this was causing inaccurate resultsMerge branch 'dev_check_ilastik_workflow' into 'staging'Report expected class of model, not actual class of shellMerge branch 'dev_imagej_testing' into 'staging'No more 404 from ilastik loading exceptionMore verbose error when matching input and model dimensionalityBetter not to wrap things in 404s, makes it hard to debugSupport patch stacks on ilastik object model that take pixel predictionsSupport patch stacks on ilastik object model that take pixel predictions