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  • 29-deserialization-can-lead-to-disconnected-objects
  • 30-ilastik-model-classes-preclude-multiple-channels
  • 32-roiset-patch-exports-don-t-support-multiple-specified-channels
  • 36-roiset-creation-may-error-when-created-with-blank-label-map
  • 37-422-when-loading-ilastik-model-from-imagej-client
  • 38-imagej-client-is-forced-to-specify-a-single-channel
  • 48-pipeline-router-circular-import-error
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  • 64-long-compute-time-blocks-pipeline-requests
  • 7-composing-pipelines-can-be-convoluted-with-accessor-class
  • 73-batch-runner-scrambles-stack-index
  • 78-task-timer-results-in-batch-jobs
  • build-2024.06.03
  • build-2024.07.08
  • chaeo_pipeline
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  • dev-proj0024-exp0005
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  • dev_conda_build
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  • 2025.02.01
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Created with Raphaël 2.2.012Feb87654331Jan302928272422920Dec1814131110976530Nov292827262522212019181514131211109432131Oct3028272625222015141372130Sep27262524232013126315Aug14131298752131Jul262422181716Merge branch 'staging' into 'master'Merge branch 'dev_batch_runner_stats' into 'staging'phenobase.push is still possible without exportsAllow writing things other than patches in roiset pipeline wrapperPhenoBase is now written automaticallyDump full tasks JSON for each iteration on stack indexDump full tasks JSON for each iteration on stack indexMerge branch 'patch_features_on_empty_roiset' into 'staging'Handling of feature extraction on empty RoiSetsMerge branch 'patch_phenobase_runner_coords' into 'staging'Harmonized how phenobase index is written to match that of RoiSet dataframesCheck that all (not any) coordinates match before raising exceptionOnly alphanumeric in coord keysReturn empty list if no phenobase is initiated yetOption to write stack_id and position to a pipeline parameterOption to write stack_id and position to a pipeline parameterMerge branch 'patch_phenobase_client_args' into 'staging'Debugging init client without_labels_csvAllow optional arg to phenobase clientMerge branch 'issue0078' into 'staging'Appending a trace also inherits source trace's timerMerge branch 'dev_roiset_features' into 'staging'Tests passAutomatically update channel number based on accessor orderPass padding param to RoiSet patch exporterissue-pad-bboxissue-pad-bboxSegment on ch 2, validate on ch 1Use DataFrame iterator for feature extractionRoiSet knows index of each patch in PatchStacksPasses on 2dIterating on patch stacks, not on object identities imageAdded label-encoded patch masksFunctional prototype of regionsprops featuresAdded utility function for moving channel to last position in ndarrayRemapped ROI pipelinesOrganizing tests accordingly, still some-cross references from base package to subpackagesRoiSet-related things go into a subpackageReorganizing things in RoiSetReorganizing things in RoiSetReorganizing things in RoiSetread CSVs via a utility method