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  • 29-deserialization-can-lead-to-disconnected-objects
  • 30-ilastik-model-classes-preclude-multiple-channels
  • 32-roiset-patch-exports-don-t-support-multiple-specified-channels
  • 36-roiset-creation-may-error-when-created-with-blank-label-map
  • 37-422-when-loading-ilastik-model-from-imagej-client
  • 38-imagej-client-is-forced-to-specify-a-single-channel
  • 48-pipeline-router-circular-import-error
  • 50-running-scripts-run_server-from-command-line-raises-errors
  • 64-long-compute-time-blocks-pipeline-requests
  • 7-composing-pipelines-can-be-convoluted-with-accessor-class
  • 73-batch-runner-scrambles-stack-index
  • 78-task-timer-results-in-batch-jobs
  • build-2024.06.03
  • build-2024.07.08
  • chaeo_pipeline
  • cluster-deploy
  • dev-proj0024-exp0005
  • dev_boundary_seg_pipeline
  • dev_conda_build
  • dev_patch_viz
  • 2025.02.01
  • 2024.11.01
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Created with Raphaël 2.2.012Aug98752131Jul2624221817161585432124Jun22212010765330May2217876326Apr1917151211109543229Mar2825222176429Feb282019157653226Jan259822Dec21201914Nov1310763231Oct30ilastik tests passNo longer assume that accessor_id and model_id are the defaultsTest passes on ilastik pipelineStill adapting ilastik pipeline testRemove model_id and accessor_id from defaultsNo longer return model_id in recordParameters auto-validates anything ending in accessor_id and model_id; call_pipeline() maps these to objects and sends to pipeline function as dicts of respective objectsLifted TODO commentIntermediate data can now be kept in session contextAdded method to filter trace's accessorsReorganized pipeline utility methodMoving as much of pipeline code as possible to reusable functionsSuperclass for pipeline parametersSegmentation pipeline over API raises correct HTTPExceptionTest covers accessor output from segmentation pipelineTest covers accessor outputRegister output accessor to session, not yet exportedAdded session method to get accessor object with and without poppingAdded and tested exception handling for unlisted accessor IDImplemented list/get/add/delete accessorsClose to implementing accessor add/delete/list to APISession can add and delete accessors to its scopeOption to specify model IDRemoved smoothing from model methodImplemented and tested method to write intermediate pipeline products to fileConfirmed ilastik pipeline runs with new module formatSegmentation pipeline works, module is annotatedPixel classification pipeline is tested with smoothing parameterRevised smoothing function to work with binary masks; tested accordinglyMerged in RoiSet polygon logic so far from YOLO dev branchMerge branch 'dev_roiset_coco' into dev_pipeline_and_smoothImplemented simple but usable segmentation modelMarked up TODOsLast commit misplaced ilastik tests; these now all passAll tests passConfirmed test server starts up with additional test-specific endpointsFixed relative pathIn the middle of restoring dummy tests, now declared within testing modules themselvesStill some references to dummy models in testingCorrected some API tests