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  • 29-deserialization-can-lead-to-disconnected-objects
  • 30-ilastik-model-classes-preclude-multiple-channels
  • 32-roiset-patch-exports-don-t-support-multiple-specified-channels
  • 36-roiset-creation-may-error-when-created-with-blank-label-map
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  • build-2024.06.03
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  • chaeo_pipeline
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Created with Raphaël 2.2.07Feb653226Jan259822Dec21201914Nov1310763231Oct30272625222019181716141312111098529Sep2827262513127654131Aug302928242322Tests passRoiSet now iterable, i.e. traverse Rois over Pandas APISimplified tests, corrected errorsProgress on running workflow, still throwing errors but suspect these just require method signature updatesProgress on testing classify_by method; need to pass preference of channel to patch generator without disrupting existing options to export RGB / multichannel stacksSplit into two test classes to simplify things a bitRepaired all multichannel export casesMore test coverage of number of channels in multichannel exportMore test coverage of number of channels in multichannel exportDon't try to write PNG if > 3 channelsProgress on assembling RGB exportsSimplified patch export methodget_patches now returns an extended DataFrame with a patch column, so that exporters have access to patch metadata with no risk of mixing up indexingRemoved example, workflow, and product-generating method that exportedProduct methods call RoiSet directly; this is causing problems with multichannel ones where raw data is essentially re-issues to RGB channelssimplifying export callsslice and mask array objects now in RoiSet's dataframeStarting to phase out use of zmask_metaMore test coverage of relative bounding boxesRemoved external build_zmask_meta functionMoved expanded and relative bounding box calcs in to DF creationFilters process only during initial construction of DataFrameMoved dataframe logic outside of constructor; losing alignment of patch stacks dfGenerate DF within constructorGenerate DF within constructorMoved zmask generation into RoiSet methodPass RoiSet object to products, much easierStable testsBrought some patch generation / export functionality into RoiSetAll tests now interface with RoiSet object instead directlyTest that calls RoiSet directlyStandardized RoiSet constructor works on object id mapsz-stack tests passSome test coverage, those that are failing are because of issues propagating nested parameters to pydantic modelsRepaired import statementRemoved trivial diffs from chaeo_extensionAdapted folder structure from masterAdapted folder structure from masterTests passThis seems to be an orphaned fragment of something else