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  • 29-deserialization-can-lead-to-disconnected-objects
  • 30-ilastik-model-classes-preclude-multiple-channels
  • 32-roiset-patch-exports-don-t-support-multiple-specified-channels
  • 36-roiset-creation-may-error-when-created-with-blank-label-map
  • 37-422-when-loading-ilastik-model-from-imagej-client
  • 38-imagej-client-is-forced-to-specify-a-single-channel
  • 48-pipeline-router-circular-import-error
  • 50-running-scripts-run_server-from-command-line-raises-errors
  • 64-long-compute-time-blocks-pipeline-requests
  • 7-composing-pipelines-can-be-convoluted-with-accessor-class
  • 73-batch-runner-scrambles-stack-index
  • 78-task-timer-results-in-batch-jobs
  • build-2024.06.03
  • build-2024.07.08
  • chaeo_pipeline
  • cluster-deploy
  • dev-proj0024-exp0005
  • dev_boundary_seg_pipeline
  • dev_conda_build
  • dev_patch_viz
  • 2025.02.01
  • 2024.11.01
  • 2024.10.01
  • 2024.06.03
  • 2024.04.19
  • 2024.03.01
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Created with Raphaël 2.2.09Aug8752131Jul2624221817161585432124Jun22212010765330May2217876326Apr1917151211109543229Mar2825222176429Feb282019157653226Jan259822Dec21201914Nov1310763231Oct302726Register output accessor to session, not yet exportedAdded session method to get accessor object with and without poppingAdded and tested exception handling for unlisted accessor IDImplemented list/get/add/delete accessorsClose to implementing accessor add/delete/list to APISession can add and delete accessors to its scopeOption to specify model IDRemoved smoothing from model methodImplemented and tested method to write intermediate pipeline products to fileConfirmed ilastik pipeline runs with new module formatSegmentation pipeline works, module is annotatedPixel classification pipeline is tested with smoothing parameterRevised smoothing function to work with binary masks; tested accordinglyMerged in RoiSet polygon logic so far from YOLO dev branchMerge branch 'dev_roiset_coco' into dev_pipeline_and_smoothImplemented simple but usable segmentation modelMarked up TODOsLast commit misplaced ilastik tests; these now all passAll tests passConfirmed test server starts up with additional test-specific endpointsFixed relative pathIn the middle of restoring dummy tests, now declared within testing modules themselvesStill some references to dummy models in testingCorrected some API testsRemoved many dummy tests; but still hitting errors in test_apiRemoved testing of dummy endpoints completelyPartial merge of dev_pipeline_refactorCorrected Gaussian smoothing in pixel mapCorrected Gaussian smoothing in pixel mapchaeo_pipelinechaeo_pipelineMerged in from stagingMerge branch 'staging' into chaeo_pipelineCheck pixel probability rangeOverlap tests pass; getting pandas warningfilter_df_overlap_bbox now includes both sides of an overlapping Roi pair as separate rowsfilter_df_overlap_bbox does not include "second" ROI in index so can be incompleteImplemented and tested creation of RoiSet from polygon coordinatesDocstring and assertion in polymer fitRemoved additional cases where accessor data was sliced directlyTest cover use .data_xy and .data_xyz propertiesAdded convenience property to get XYZ ndarray on mono arrays