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Created with Raphaël 2.2.026Jan259822Dec21201914Nov1310763231Oct30272625222019181716141312111098529Sep2827262513127654131Aug302928242322Tuning parameters using boundary pixel classifierMade a workaround for passing all channels to pixel classifier; stable export script using this from multiposition CZIsManually made correction that is already implemented on masterAllow YXZ from TIF filesScript to export patch stacks from non-PA TREC dataDebugging loop on multichannel CZIImplemented utility functions to export subblock and XML data from CZI files, as well as to return a single position's accessor from a multiposition fileDefault mip=False in ilastik workflow APICorrect reference error in ilastik configurationoptionally make MIP when extracting single channel from accessorReorganzed ImageJ example to exist outside this codebaseChange default path for session dataMade ImageJ example script a bit more user-friendlyAdded ImageJ exampleMerge branch 'master' of git.embl.de:rhodes/model_serverAdditional installation instructionAdditional installation instructionAdditional installation instructionAdded retry mechanism to status confirmation, to address suspect timeout problemRebuilt dependency filesUser path variables in prompt instructionsUpdated run_server command with relative path to user profile for mamba promptUpdated run_server command with relative path to user profile for mamba promptChanged ImageJ examplesRemoved environment dependencies, since mamba create call seems to resolve theseMerge branch 'pip_build'Added installation instructions in README.mdpip_buildpip_buildMerge branch 'master' of git.embl.de:rhodes/model_serverAdded Windows shortcutsIgnore PyCharm filesIgnore PyCharm filesIgnore build artifactsTests pass in this project structureMinimal docs for pip build to useExport DataFrame from workflowFilters propagate from parameters dictDummy object classification exports mapCan make patch stack from itselfConsolidated more parameters into pydantic modelsConsolidated more parameters into pydantic models