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Created with Raphaël 2.2.07Feb653226Jan259822Dec21201914Nov1310763231Oct30272625222019181716141312111098529Sep2827262513127654131Aug302928242322Single annotator method for annotated zstacksTests passRoiSet now iterable, i.e. traverse Rois over Pandas APISimplified tests, corrected errorsProgress on running workflow, still throwing errors but suspect these just require method signature updatesProgress on testing classify_by method; need to pass preference of channel to patch generator without disrupting existing options to export RGB / multichannel stacksSplit into two test classes to simplify things a bitRepaired all multichannel export casesMore test coverage of number of channels in multichannel exportMore test coverage of number of channels in multichannel exportDon't try to write PNG if > 3 channelsProgress on assembling RGB exportsSimplified patch export methodget_patches now returns an extended DataFrame with a patch column, so that exporters have access to patch metadata with no risk of mixing up indexingRemoved example, workflow, and product-generating method that exportedProduct methods call RoiSet directly; this is causing problems with multichannel ones where raw data is essentially re-issues to RGB channelssimplifying export callsslice and mask array objects now in RoiSet's dataframeStarting to phase out use of zmask_metaMore test coverage of relative bounding boxesRemoved external build_zmask_meta functionMoved expanded and relative bounding box calcs in to DF creationFilters process only during initial construction of DataFrameMoved dataframe logic outside of constructor; losing alignment of patch stacks dfGenerate DF within constructorGenerate DF within constructorMoved zmask generation into RoiSet methodPass RoiSet object to products, much easierStable testsBrought some patch generation / export functionality into RoiSetAll tests now interface with RoiSet object instead directlyTest that calls RoiSet directlyStandardized RoiSet constructor works on object id mapsz-stack tests passSome test coverage, those that are failing are because of issues propagating nested parameters to pydantic modelsRepaired import statementRemoved trivial diffs from chaeo_extensionAdapted folder structure from masterAdapted folder structure from masterTests pass