Move registration/9.9.9 to registration/deprecated

70aae27e · Constantin Pape · 3de17f55 · 3de17f55 · 70aae27e · 70aae27e
Commit 70aae27e authored 5 years ago by Constantin Pape
--- a/registration/0.5.4/README.txt
+++ b/registration/0.5.4/README.txt
-Registration based only on nuclei/dapi. I got this from Tischi and I am not quite sure if these transformations correspond to '9.9.9/transformations'.
-Replace this folder with 9.9.9, if transformations turn out to be identical.
--- a/registration/9.9.9/EM/nuclei_to_remove.csv
+++ b/registration/9.9.9/EM/nuclei_to_remove.csv
--- a/registration/9.9.9/EM/nucleus_exclusion_mask.xml
+++ b/registration/9.9.9/EM/nucleus_exclusion_mask.xml
--- a/registration/9.9.9/notes/registration-strategy.txt
+++ b/registration/9.9.9/notes/registration-strategy.txt
--- a/registration/9.9.9/quality-assessment/compute-registration-quality.R
+++ b/registration/9.9.9/quality-assessment/compute-registration-quality.R
--- a/registration/9.9.9/quality-assessment/em-fixed-points.txt
+++ b/registration/9.9.9/quality-assessment/em-fixed-points.txt
--- a/registration/9.9.9/quality-assessment/manually_matched_points.xlsx
+++ b/registration/9.9.9/quality-assessment/manually_matched_points.xlsx
--- a/registration/9.9.9/quality-assessment/notes.txt
+++ b/registration/9.9.9/quality-assessment/notes.txt
--- a/registration/9.9.9/quality-assessment/outputpoints.txt
+++ b/registration/9.9.9/quality-assessment/outputpoints.txt
--- a/registration/9.9.9/quality-assessment/transformix.log
+++ b/registration/9.9.9/quality-assessment/transformix.log
--- a/registration/9.9.9/quality-assessment/~$manually_matched_points.xlsx
+++ b/registration/9.9.9/quality-assessment/~$manually_matched_points.xlsx
--- a/registration/9.9.9/scripts/elastix.ijm
+++ b/registration/9.9.9/scripts/elastix.ijm
--- a/registration/9.9.9/scripts/mask_gut_nuclei.py
+++ b/registration/9.9.9/scripts/mask_gut_nuclei.py
--- a/registration/9.9.9/scripts/prepare_image_data.ijm
+++ b/registration/9.9.9/scripts/prepare_image_data.ijm
--- a/registration/9.9.9/scripts/registration_targets/exclude_nuclei_from_table.py
+++ b/registration/9.9.9/scripts/registration_targets/exclude_nuclei_from_table.py
--- a/registration/9.9.9/scripts/registration_targets/move_meds.py
+++ b/registration/9.9.9/scripts/registration_targets/move_meds.py
--- a/registration/9.9.9/scripts/registration_targets/set_voxel_size.ijm
+++ b/registration/9.9.9/scripts/registration_targets/set_voxel_size.ijm
--- a/registration/9.9.9/scripts/registration_targets/stomach_registration_targets.py
+++ b/registration/9.9.9/scripts/registration_targets/stomach_registration_targets.py
--- a/registration/9.9.9/scripts/transfer_ProSPr_data/ProSPr_copy_and_mirror.ijm
+++ b/registration/9.9.9/scripts/transfer_ProSPr_data/ProSPr_copy_and_mirror.ijm
--- a/registration/9.9.9/scripts/transfer_ProSPr_data/ProSPr_copy_and_mirror.sh
+++ b/registration/9.9.9/scripts/transfer_ProSPr_data/ProSPr_copy_and_mirror.sh