Merge branch 'val_and_correction' into 'master'
Segmentation validation and correction See merge request !8
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- scripts/attributes/region_attributes.py 2 additions, 3 deletionsscripts/attributes/region_attributes.py
- scripts/segmentation/correction/__init__.py 8 additions, 0 deletionsscripts/segmentation/correction/__init__.py
- scripts/segmentation/correction/annotation_tool.py 213 additions, 0 deletionsscripts/segmentation/correction/annotation_tool.py
- scripts/segmentation/correction/assignment_diffs.py 54 additions, 0 deletionsscripts/segmentation/correction/assignment_diffs.py
- scripts/segmentation/correction/cillia_correction_tool.py 216 additions, 0 deletionsscripts/segmentation/correction/cillia_correction_tool.py
- scripts/segmentation/correction/correction_tool.py 441 additions, 0 deletionsscripts/segmentation/correction/correction_tool.py
- scripts/segmentation/correction/export_node_labels.py 177 additions, 0 deletionsscripts/segmentation/correction/export_node_labels.py
- scripts/segmentation/correction/heuristics.py 173 additions, 0 deletionsscripts/segmentation/correction/heuristics.py
- scripts/segmentation/correction/preprocess.py 117 additions, 0 deletionsscripts/segmentation/correction/preprocess.py
- scripts/segmentation/validation/__init__.py 2 additions, 0 deletionsscripts/segmentation/validation/__init__.py
- scripts/segmentation/validation/eval_cells.py 84 additions, 0 deletionsscripts/segmentation/validation/eval_cells.py
- scripts/segmentation/validation/eval_nuclei.py 72 additions, 0 deletionsscripts/segmentation/validation/eval_nuclei.py
- scripts/segmentation/validation/evaluate_annotations.py 134 additions, 0 deletionsscripts/segmentation/validation/evaluate_annotations.py
- scripts/segmentation/validation/refine_annotations.py 118 additions, 0 deletionsscripts/segmentation/validation/refine_annotations.py
- segmentation/correction/correct_cell_segmentation.py 175 additions, 0 deletionssegmentation/correction/correct_cell_segmentation.py
- segmentation/correction/deprecated.py 47 additions, 0 deletionssegmentation/correction/deprecated.py
- segmentation/correction/fix_assignments.py 69 additions, 0 deletionssegmentation/correction/fix_assignments.py
- segmentation/correction/morphology_outlier.py 53 additions, 0 deletionssegmentation/correction/morphology_outlier.py
- segmentation/validation/check_validation.py 106 additions, 0 deletionssegmentation/validation/check_validation.py
- segmentation/validation/eval_cell_segmentation.py 94 additions, 0 deletionssegmentation/validation/eval_cell_segmentation.py
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