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Commit bedeb52a authored by Hernando Martinez Vergara's avatar Hernando Martinez Vergara
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Update README.md

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...@@ -121,7 +121,12 @@ In addition to the data, the scripts for generating registration and producing d ...@@ -121,7 +121,12 @@ In addition to the data, the scripts for generating registration and producing d
### Registration ### Registration
The folder `registration` contains ... The folder `registration` contains:
A folder called transfer_ProSPr_data. This folder contains the scripts needed to copy and process the ProSPr output to
'/g/arendt/EM_6dpf_segmentation/platy-browser-data/data/rawdata/prospr'.
It reads the .tif files that will be registered to the EM (e.g. MEDs, tissue manual segmentations, reference),
mirrors them in x axis, adds size information (0.55um/px), and deals with gene names.
run it in the cluster: sbatch ./ProSPr_copy_and_mirror.sh
### Segmentation ### Segmentation
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