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Commit ca709159 authored by Kimberly Isobel Meechan's avatar Kimberly Isobel Meechan
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Changed to shape_pixelsize, no n_pixels in table

parent 46268e2c
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from datetime import datetime
#TODO - uncomment this part
# this is a task called by multiple processes,
# so we need to restrict the number of threads used by numpy
from cluster_tools.utils.numpy_utils import set_numpy_threads
set_numpy_threads(1)
#from cluster_tools.utils.numpy_utils import set_numpy_threads
#set_numpy_threads(1)
import numpy as np
import h5py
......@@ -31,11 +32,12 @@ def get_scale_factor(path, key_full, key, resolution):
return scale_factor
# changed to shape_pixel_size, is the plan to go to n_pixels in future?
def filter_table(table, min_size, max_size):
if max_size is None:
table = table.loc[table['n_pixels'] >= min_size, :]
table = table.loc[table['shape_pixelsize'] >= min_size, :]
else:
criteria = np.logical_and(table['n_pixels'] > min_size, table['n_pixels'] < max_size)
criteria = np.logical_and(table['shape_pixelsize'] > min_size, table['shape_pixelsize'] < max_size)
table = table.loc[criteria, :]
return table
......
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