Commits · a6f91df44c7cfa2e418546888dbc9c4328ff4ce0 · Christian Tischer / platy-browser-data · GitLab

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Aug 23, 2019
- Add gene expression computation · a6f91df4
  Constantin Pape authored 5 years ago
  
  a6f91df4
- Fix bdv-server configs; add test folder for bdv-server · 5ecd38c3
  Constantin Pape authored 5 years ago
  
  5ecd38c3
Aug 21, 2019
- Add version.json · 1bf7fa48
  Constantin Pape authored 5 years ago
  
  1bf7fa48
Aug 20, 2019
- Fix some issues in table generation and copying · 4592575c
  Constantin Pape authored 5 years ago
  
  4592575c
Aug 16, 2019
- Fix some path issues and error handling in bdv script · 441de54d
  Constantin Pape authored 5 years ago
  
  441de54d
- Udpate README; fix minor issues · 306dc8f3
  Constantin Pape authored 5 years ago
  
  306dc8f3
- Make bdv server files for major and minor releases; add post-processing options (not tested) · 2378ceb9
  Constantin Pape authored 5 years ago
  
  2378ceb9
- Fix minor issues; update README.md and environment.yaml · 428414fa
  Constantin Pape authored 5 years ago
  
  428414fa
- Fix some issues; make new release · 6f5cc970
  Constantin Pape authored 5 years ago
  
  0.3.0
  
  6f5cc970
- Implement update_major and update_minor (not tested) · 9a715fbe
  Constantin Pape authored 5 years ago
  
  9a715fbe
Aug 15, 2019
- Refactor update_patch to account for new data management · 6488faa0
  Constantin Pape authored 5 years ago
  
  6488faa0
- add_segmentation is working for dynamic segmentations and added existing dynamic segmentations · 881918f9
  Constantin Pape authored 5 years ago
  
  881918f9
- add_segmentation is working for static segmentation and added existing static segmentations · e62eb491
  Constantin Pape authored 5 years ago
  
  e62eb491
- add_image is working and added all existing image data · c943b07f
  Constantin Pape authored 5 years ago
  
  c943b07f
- Implement mechanism to add new image data and start retrofitting the existing data · 083d67bd
  Constantin Pape authored 5 years ago
  
  083d67bd
Aug 13, 2019
- Prepare for new data source scheme · 36bb50bb
  Constantin Pape authored 5 years ago
  
  36bb50bb
- Update source logic · af3f3d65
  Constantin Pape authored 5 years ago
  
  af3f3d65
- Add mechanism to change default config values and change conda env · a83a430c
  Constantin Pape authored 5 years ago
  
  a83a430c
Aug 06, 2019
- Update bdv server script · 85c5fc38
  Constantin Pape authored 5 years ago
  
  85c5fc38
Jul 14, 2019
- Fix some issues in morphology refactor and tests · 81e9a4c9
  Constantin Pape authored 5 years ago
  
  81e9a4c9
- Refactor morphology feature implementation in separate file · 7fe3e58d
  Constantin Pape authored 5 years ago
  
  7fe3e58d
Jul 11, 2019
- Fix issues in segmentation id mapping · 122d78b0
  Constantin Pape authored 5 years ago
  
  122d78b0
Jul 10, 2019
- Working version of subvolume extraction · 7fe70128
  Constantin Pape authored 5 years ago
  
  7fe70128
Jul 09, 2019
- Start to implement subvolume extraction WIP · 28f13eb2
  Constantin Pape authored 5 years ago
  
  28f13eb2
- Add cell count script · 1ab5d8d1
  Constantin Pape authored 5 years ago
  
  1ab5d8d1
- Update nucleus mapping script · e0c42e4e
  Constantin Pape authored 5 years ago
  
  e0c42e4e
Jul 07, 2019
- Copy segment id lut when copying segmentation xml · d9a5b411
  Constantin Pape authored 5 years ago
  
  d9a5b411
Jul 06, 2019
- Add export scripts for cilia segmentation · f634feca
  Constantin Pape authored 5 years ago
  
  f634feca
- Add scripts to copy tables · 72dfb368
  Constantin Pape authored 5 years ago
  
  72dfb368
Jun 30, 2019
- Implement anchor correction · 1c8e755e
  Constantin Pape authored 5 years ago
  
  1c8e755e
- Fix several issues in update_platy_browser · 886241a6
  Constantin Pape authored 5 years ago
  
  886241a6
Jun 29, 2019
- Restrict numpy threads for morphology extraction · 33bcbdb4
  Constantin Pape authored 5 years ago
  
  33bcbdb4
Jun 27, 2019
- Add segmented prospr regions to region attributes and adapt muscle mapping · 4816b25e
  Constantin Pape authored 5 years ago
  
  4816b25e
- Add segmented prospr regions to initial version and copy scripts · 07f762e0
  Constantin Pape authored 5 years ago
  
  07f762e0
Jun 21, 2019
- Fix name issues in attribute scripts · ce5d435b
  Constantin Pape authored 5 years ago
  
  ce5d435b
- Add bookmarks.json to misc data · 635f6c74
  Constantin Pape authored 5 years ago
  
  635f6c74
- Finish file renaming and update scripts · 8a1e833c
  Constantin Pape authored 5 years ago
  
  8a1e833c
- Implemnt file renaming WIP · 423233da
  Constantin Pape authored 5 years ago
  
  423233da
- Add bigdataserver file · d8fcd34f
  Constantin Pape authored 5 years ago
  
  d8fcd34f
Jun 20, 2019
- Add all MED files · a37678aa
  Constantin Pape authored 5 years ago
  
  a37678aa