Commits · a83a430ca0db42f5202d8db17d8e3ddfc79be82f · Christian Tischer / platy-browser-data · GitLab

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Aug 13, 2019
- Add mechanism to change default config values and change conda env · a83a430c
  Constantin Pape authored 5 years ago
  
  a83a430c
Aug 06, 2019
- Update bdv server script · 85c5fc38
  Constantin Pape authored 5 years ago
  
  85c5fc38
Jul 14, 2019
- Fix some issues in morphology refactor and tests · 81e9a4c9
  Constantin Pape authored 5 years ago
  
  81e9a4c9
- Refactor morphology feature implementation in separate file · 7fe3e58d
  Constantin Pape authored 5 years ago
  
  7fe3e58d
Jul 11, 2019
- Fix issues in segmentation id mapping · 122d78b0
  Constantin Pape authored 5 years ago
  
  122d78b0
Jul 10, 2019
- Working version of subvolume extraction · 7fe70128
  Constantin Pape authored 5 years ago
  
  7fe70128
Jul 09, 2019
- Start to implement subvolume extraction WIP · 28f13eb2
  Constantin Pape authored 5 years ago
  
  28f13eb2
- Add cell count script · 1ab5d8d1
  Constantin Pape authored 5 years ago
  
  1ab5d8d1
- Update nucleus mapping script · e0c42e4e
  Constantin Pape authored 5 years ago
  
  e0c42e4e
Jul 07, 2019
- Copy segment id lut when copying segmentation xml · d9a5b411
  Constantin Pape authored 5 years ago
  
  d9a5b411
Jul 06, 2019
- Add export scripts for cilia segmentation · f634feca
  Constantin Pape authored 5 years ago
  
  f634feca
- Add scripts to copy tables · 72dfb368
  Constantin Pape authored 5 years ago
  
  72dfb368
Jun 30, 2019
- Implement anchor correction · 1c8e755e
  Constantin Pape authored 5 years ago
  
  1c8e755e
- Fix several issues in update_platy_browser · 886241a6
  Constantin Pape authored 5 years ago
  
  886241a6
Jun 29, 2019
- Restrict numpy threads for morphology extraction · 33bcbdb4
  Constantin Pape authored 5 years ago
  
  33bcbdb4
Jun 27, 2019
- Add segmented prospr regions to region attributes and adapt muscle mapping · 4816b25e
  Constantin Pape authored 5 years ago
  
  4816b25e
- Add segmented prospr regions to initial version and copy scripts · 07f762e0
  Constantin Pape authored 5 years ago
  
  07f762e0
Jun 21, 2019
- Fix name issues in attribute scripts · ce5d435b
  Constantin Pape authored 5 years ago
  
  ce5d435b
- Add bookmarks.json to misc data · 635f6c74
  Constantin Pape authored 5 years ago
  
  635f6c74
- Finish file renaming and update scripts · 8a1e833c
  Constantin Pape authored 5 years ago
  
  8a1e833c
- Implemnt file renaming WIP · 423233da
  Constantin Pape authored 5 years ago
  
  423233da
- Add bigdataserver file · d8fcd34f
  Constantin Pape authored 5 years ago
  
  d8fcd34f
Jun 20, 2019
- Add all MED files · a37678aa
  Constantin Pape authored 5 years ago
  
  a37678aa
- Add cell region script and table · 4202df6b
  Constantin Pape authored 5 years ago
  
  4202df6b
Jun 13, 2019
- Skip invalid labels in morphology computation instead of placeholder features · 408c9dad
  Constantin Pape authored 5 years ago
  
  408c9dad
- Wrap morphology calculation in cluster task; parallelize it · 224f2ea2
  Constantin Pape authored 5 years ago
  
  224f2ea2
Jun 12, 2019
- Wrap gene expression in cluster task; vectorize and parallelize computation · 2aa06f51
  Constantin Pape authored 5 years ago
  
  2aa06f51
- Simplify cell property calculation for gene attributes · 7ddc3228
  Constantin Pape authored 5 years ago
  
  7ddc3228
Jun 11, 2019
- Add test for morphology attributes · eddbc834
  Constantin Pape authored 5 years ago
  
  eddbc834
- Refactor morphology functions and simplify bounding box calculation · fe2a9c01
  Constantin Pape authored 5 years ago
  
  fe2a9c01
- Fix bug in base attributes · 560d3cea
  Constantin Pape authored 5 years ago
  
  560d3cea
- Add test for base attributes · 5e111e30
  Constantin Pape authored 5 years ago
  
  5e111e30
- PEP8 · 3682f1fe
  Constantin Pape authored 5 years ago
  
  3682f1fe
- Add morphology script · fd712ab5
  Kimberly Isobel Meechan authored 5 years ago
  
  fd712ab5
Jun 07, 2019
- Add xml functionality · a79091e1
  Constantin Pape authored 5 years ago
  
  a79091e1
- Update gene script and call it for cell master table · 693f7a25
  Constantin Pape authored 5 years ago
  
  693f7a25
- PEP8 · c08565cb
  Constantin Pape authored 5 years ago
  
  c08565cb
- cleaned up · 2199c143
  Valentyna Zinchenko authored 5 years ago
  
  2199c143
- script to write gene table · b75430bc
  Valentyna Zinchenko authored 5 years ago
  
  b75430bc
Jun 05, 2019
- Add script for object mapping tables · 80c1e89b
  Constantin Pape authored 5 years ago
  
  80c1e89b