Morphology (!9) · Merge requests · Christian Tischer / platy-browser-data · GitLab

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Merged Kimberly Isobel Meechan requested to merge morphology into master 5 years ago

Feb 01, 2020
- Merge branch 'master' into 'morphology' · 25c62706
  Constantin Pape authored 5 years ago
  
  # Conflicts: # .gitignore
  25c62706
Jan 30, 2020
- update comments · 8e478a6a
  Kimberly Isobel Meechan authored 5 years ago
  
  8e478a6a
Jan 29, 2020
- add back numpy thread setting · 62bb40fb
  Kimberly Isobel Meechan authored 5 years ago
  
  62bb40fb
Jan 28, 2020
- fixed calls to column generation function · f40e7e23
  Kimberly Isobel Meechan authored 5 years ago
  
  f40e7e23
- removed radial intensity for cells where nucleus area is excluded · 907c84c3
  Kimberly Isobel Meechan authored 5 years ago
  
  907c84c3
- neatened up & did docstrings · 0a4044e7
  Kimberly Isobel Meechan authored 5 years ago
  
  0a4044e7
- fixed bug with excluding the nucleus area, swapped all resize to use vigra · b8118ec1
  Kimberly Isobel Meechan authored 5 years ago
  
  b8118ec1
- separated filters into own function · c84be4c0
  Kimberly Isobel Meechan authored 5 years ago
  
  c84be4c0
- moved column generation into separate function, merged... · aad7c22f
  Kimberly Isobel Meechan authored 5 years ago
  
  moved column generation into separate function, merged compute_morphology_features function into main function
  aad7c22f
- split main function into two · 181976df
  Kimberly Isobel Meechan authored 5 years ago
  
  181976df
Jan 24, 2020
- neatened script · 8c06a726
  Kimberly Isobel Meechan authored 5 years ago
  
  8c06a726
Jul 17, 2019
- More cell features added - rough · 8c04dd44
  Kimberly Isobel Meechan authored 5 years ago
  
  8c04dd44
Jul 16, 2019
- Added further intensity features, texture features and chromatin features · 8c34447f
  Kimberly Isobel Meechan authored 5 years ago
  
  8c34447f
Jul 15, 2019
- add texture features · 9eb2c4c3
  Kimberly Isobel Meechan authored 5 years ago
  
  9eb2c4c3
- added more morphology row features · b4e83b75
  Kimberly Isobel Meechan authored 5 years ago
  
  b4e83b75
- Changed to shape_pixelsize, no n_pixels in table · ca709159
  Kimberly Isobel Meechan authored 5 years ago
  
  ca709159
- ignore .idea files · 46268e2c
  Kimberly Isobel Meechan authored 5 years ago
  
  46268e2c