packages.R

install.packages("aws.s3", repos = c("https://RForge.net", "https://cloud.R-project.org"))
install.packages("BIOMOD", repos="http://R-Forge.R-project.org")
install.packages("mclust")
install.packages("devtools")
library(devtools)
devtools::install_github("thomasp85/patchwork")
devtools::install_github(repo = "ebecht/hypergate")
install.packages("plotly")
install.packages("shinycustomloader")
install.packages("rpart")
install.packages("rpart.plot")
install.packages("xml2")
install.packages("rgeos", repos="http://R-Forge.R-project.org", type="source")
install.packages("ggplot2")
install.packages("reshape2")
install.packages("plyr")
install.packages("gridExtra")
install.packages("waiter")
install.packages("grid")
install.packages("DT")
install.packages("ggrepel")
install.packages("RColorBrewer")
install.packages("dplyr")
install.packages('Seurat')
# try install seurat Error in GetAssayData: could not find function "GetAssayData"
devtools::install_github(repo = 'satijalab/seurat', ref = 'develop')
install.packages(c("sp", "polyclip"))
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("flowCore")