HPC Slurm fully functionnal on HGSVC samples
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- .gitignore 3 additions, 0 deletions.gitignore
- CHANGELOG.md 26 additions, 0 deletionsCHANGELOG.md
- README.md 130 additions, 54 deletionsREADME.md
- afac/change-log-builder.sh 12 additions, 0 deletionsafac/change-log-builder.sh
- afac/convert_strandphaser_input.R 13 additions, 8 deletionsafac/convert_strandphaser_input.R
- afac/hgsvc_samples_symlink.py 69 additions, 0 deletionsafac/hgsvc_samples_symlink.py
- workflow/Snakefile 12 additions, 3 deletionsworkflow/Snakefile
- workflow/config/config.yaml 14 additions, 1 deletionworkflow/config/config.yaml
- workflow/profiles/slurm/config.yaml 32 additions, 0 deletionsworkflow/profiles/slurm/config.yaml
- workflow/rules/count.smk 9 additions, 18 deletionsworkflow/rules/count.smk
- workflow/rules/haplotagging.smk 4 additions, 4 deletionsworkflow/rules/haplotagging.smk
- workflow/rules/input_check.smk 1 addition, 4 deletionsworkflow/rules/input_check.smk
- workflow/rules/mosaiclassifier.smk 11 additions, 12 deletionsworkflow/rules/mosaiclassifier.smk
- workflow/rules/plots.smk 13 additions, 35 deletionsworkflow/rules/plots.smk
- workflow/rules/postprocessing.smk 9 additions, 2 deletionsworkflow/rules/postprocessing.smk
- workflow/rules/regenotyping.smk 12 additions, 5 deletionsworkflow/rules/regenotyping.smk
- workflow/rules/segmentation.smk 8 additions, 18 deletionsworkflow/rules/segmentation.smk
- workflow/rules/setup.smk 3 additions, 4 deletionsworkflow/rules/setup.smk
- workflow/rules/stats.smk 0 additions, 4 deletionsworkflow/rules/stats.smk
- workflow/rules/strandphaser.smk 34 additions, 20 deletionsworkflow/rules/strandphaser.smk
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