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Commit 07d8af42 authored by Sascha Meiers's avatar Sascha Meiers
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Added more numbers of segments

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......@@ -14,13 +14,15 @@ rule all:
"log/StrandPhaseR.config",
expand("plots/" + config["sample"] + ".{window}_fixed.pdf", window = [50000, 100000, 200000, 500000]),
expand("plots/" + config["sample"] + ".{window}_variable.pdf", window = [50000, 100000]),
expand("segmentation2/" + config["sample"] + ".{window}_fixed.{bpdens}.txt", window = [50000, 100000, 200000, 500000], bpdens = ["few","many"]),
expand("segmentation2/" + config["sample"] + ".{window}_variable.{bpdens}.txt", window = [50000, 100000], bpdens = ["few","many"]),
expand("segmentation2/" + config["sample"] + ".{window}_fixed.{bpdens}.txt",
window = [50000, 100000, 200000, 500000], bpdens = ["few","medium","many"]),
expand("segmentation2/" + config["sample"] + ".{window}_variable.{bpdens}.txt",
window = [50000, 100000], bpdens = ["few","medium","many"]),
"strand_states/" + config["sample"] + ".final.txt",
expand("sv_calls/" + config["sample"] + ".{window}_fixed.{bpdens}.SV_probs.pdf",
window = [50000, 100000, 200000, 500000], bpdens = ["few","many"]),
window = [50000, 100000, 200000, 500000], bpdens = ["few","medium","many"]),
expand("sv_calls/" + config["sample"] + ".{window}_variable.{bpdens}.SV_probs.pdf",
window = [50000, 100000], bpdens = ["few","many"])
window = [50000, 100000], bpdens = ["few","medium","many"])
......
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