Whitelist provided by Ashley

utils/normalization/inversion-whitelist.tsv

+chrom	start	end
+chr1	12836750	12878429
+chr1	13045881	13068467
+chr1	13104310	13122300
+chr1	16336670	16338771
+chr1	16549762	16951955
+chr1	43592391	43595367
+chr1	80327754	80330649
+chr1	92795193	92798124
+chr1	103603323	103773686
+chr1	108311832	108413037
+chr1	120223481	120684157
+chr1	143260028	143530288
+chr1	144077028	144882807
+chr1	148891846	149229929
+chr1	149820003	149876338
+chr1	157916148	157919336
+chr1	175231430	175232801
+chr1	181074767	181074952
+chr1	187497343	187497605
+chr1	197786515	197789904
+chr1	205209502	205209706
+chr1	207117466	207121056
+chr1	227492259	227500523
+chr1	237402801	237402917
+chr1	239952717	239953380
+chr1	248519447	248530939
+chr2	16225238	16226719
+chr2	50587051	50589804
+chr2	88773367	88780091
+chr2	89032595	89061774
+chr2	90326160	91608532
+chr2	91820048	92039398
+chr2	94189553	94292414
+chr2	95481309	95598040
+chr2	95773379	96033749
+chr2	97214646	97497378
+chr2	109753975	110654845
+chr2	124293287	124296257
+chr2	128926439	128929348
+chr2	130533892	130650178
+chr2	138246675	138251784
+chr2	143314030	143316861
+chr2	179551494	179557450
+chr2	183700313	183707387
+chr2	221701999	221705483
+chr2	224428235	224428368
+chr2	240672311	240702025
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+chr3	44698573	44701797
+chr3	75662604	75708229
+chr3	104587454	104589764
+chr3	131968697	131978538
+chr3	162807598	162829871
+chr3	191115781	191116229
+chr3	195615104	195996875
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+chr4	9071649	9097101
+chr4	14835447	14837537
+chr4	40232818	40236154
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+chr4	87925967	87937206
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+chr4	133003137	133009292
+chr4	145693712	145694599
+chr4	162656318	162659248
+chr4	167184943	167197126
+chr4	187948270	187956677
+chr5	46435513	46565431
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+chr5	116011018	116015368
+chr5	148174675	148175214
+chr5	170170693	170171747
+chr5	181098356	181102201
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+chr6	12430507	12433398
+chr6	26722648	26781180
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+chr6	89212355	89215355
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+chr6	106720191	106723973
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+chr6	130525181	130535874
+chr6	131563647	131563962
+chr6	167194362	167358477
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+chr6	168692356	168695795
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+chr7	5906707	5978872
+chr7	5978874	6747083
+chr7	40833456	40842024
+chr7	47613072	47616567
+chr7	54231737	54316407
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+chr8	2250154	2479751
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+chr8	12158093	12226511
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+chr8	85734618	85742425
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+chr10	73659954	73660162
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+chr11	4274130	4292550
+chr11	36309611	36309951
+chr11	48880467	48899971
+chr11	50132556	50347138
+chr11	62094890	62101552
+chr11	66250101	66253619
+chr11	89744798	90095507
+chr12	10000	76659
+chr12	12391025	12394627
+chr12	13389468	13398643
+chr12	39466254	39466531
+chr12	46636683	46639526
+chr12	46896485	46916160
+chr12	49788783	49789348
+chr12	65423608	65426407
+chr12	71139014	71139972
+chr12	71314623	71317616
+chr12	71541193	71552738
+chr12	127905269	127908444
+chr12	131294575	131312923
+chr12	131652899	131663807
+chr13	18215202	18357590
+chr13	18408230	18565145
+chr13	37314464	37318514
+chr13	52215009	52595850
+chr13	63716793	63769525
+chr13	81782733	81782838
+chr13	85728870	85731234
+chr14	18601518	18652308
+chr14	18652959	18712327
+chr14	19663449	19955079
+chr14	34545248	34562456
+chr14	40905661	40908696
+chr14	47853926	47856952
+chr14	60604530	60613253
+chr14	65374516	65377987
+chr14	93459758	93460230
+chr14	105772316	105774757
+chr15	20984202	21021610
+chr15	21032464	21073547
+chr15	21077238	21685069
+chr15	21836222	22618492
+chr15	23252404	23312907
+chr15	28429032	28481026
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+chr15	75273163	75278891
+chr15	82337122	82527079
+chr15	84267648	84513678
+chr15	94938409	94938499
+chr16	1228343	1258965
+chr16	14769189	15377775
+chr16	16210630	18436487
+chr16	18486486	18557731
+chr16	18723622	18753202
+chr16	21567330	22701560
+chr16	28457770	28740547
+chr16	32790679	33540870
+chr16	48616897	48617754
+chr16	55766401	55837260
+chr16	69727516	69728993
+chr16	70121788	70166477
+chr16	74408184	74419503
+chr16	85154003	85157243
+chr17	5981170	5984654
+chr17	11124743	11128016
+chr17	14756063	14759055
+chr17	16754544	16845398
+chr17	18423506	18512829
+chr17	18607041	18827456
+chr17	21400640	21450526
+chr17	21649035	21678194
+chr17	21687297	21824188
+chr17	21824199	21884337
+chr17	22125930	22158426
+chr17	30616145	30631343
+chr17	33356931	33357111
+chr17	34854675	34855873
+chr17	60024806	60126538
+chr18	12141461	12150226
+chr18	13918346	13919778
+chr19	7022269	7064756
+chr19	7322020	7322520
+chr19	16056196	16058829
+chr19	24891502	24909637
+chr19	50604046	50609088
+chr20	10806629	10809752
+chr20	26061210	26091730
+chr20	30381284	30425082
+chr21	6364078	6376932
+chr21	26000477	26003856
+chr21	26647154	26650648
+chr22	12029831	12047017
+chr22	12156734	12175013
+chr22	12176622	12178933
+chr22	12364281	12371541
+chr22	15922753	15940421
+chr22	21442965	21496091
+chr22	23949470	23963321
+chrX	5811083	5812751
+chrX	6218929	6220353
+chrX	43989014	43993912
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+chrX	51669469	51713883
+chrX	52070847	52192188
+chrX	52489201	52533696
+chrX	52907445	52977241
+chrX	55464229	55511347
+chrX	63182029	63198950
+chrX	67415258	67518902
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+chrX	73004367	73079523
+chrX	76141674	76153292
+chrX	101597522	101616276
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+chrX	149591230	149663655
+chrX	149671972	149735388
+chrX	149742318	149776625
+chrX	152705955	152752524
+chrX	153066014	153084051
+chrX	153121931	153292732
+chrX	154346996	154385012
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