remove cell-mixing experiment

Snakefile

@@ -67,7 +67,7 @@ BPDENS = [
     "selected_j{}_s{}_scedist{}".format(joint, single, scedist) for joint in [0.1] for single in [0.5] for scedist in [5,20]
 ]
 
-singularity: "docker://smei/mosaicatcher-pipeline:v0.1"
+singularity: "docker://smei/mosaicatcher-pipeline:latest"
 
 localrules:
     all,
@@ -1083,14 +1083,14 @@ rule aggregate_summary_statistics:
     shell:
         "(head -n1 {input.tsv[0]} && (tail -n1 -q {input.tsv} | sort -k1) ) > {output}"
     
-rule evaluate_cell_mixing:
-    input:
-        sv_calls = expand('sv_calls/{sample}/{{windows}}.{{bpdens}}/{{method}}.txt', sample=SAMPLES),
-        truth = '../input-data/ground_truth/RPE-BM510_manual/clonal-events.tsv',
-    output:
-        tsv = 'cell-mixing-eval/{windows}.{bpdens}/{method}.tsv'
-    log:
-        'cell-mixing-eval/{windows}.{bpdens}/{method}.log'
-    run:
-        names = ','.join(SAMPLES)
-        shell('utils/evaluate_cell_mixing.py --names {names} {input.truth} {input.sv_calls} > {output.tsv} 2> {log}')
+#rule evaluate_cell_mixing:
+#    input:
+#        sv_calls = expand('sv_calls/{sample}/{{windows}}.{{bpdens}}/{{method}}.txt', sample=SAMPLES),
+#        truth = config["ground_truth_clonal"][wildcards.sample],
+#    output:
+#        tsv = 'cell-mixing-eval/{sample}/{windows}.{bpdens}/{method}.tsv'
+#    log:
+#        'cell-mixing-eval/{sample}/{windows}.{bpdens}/{method}.log'
+#    run:
+#        names = ','.join(SAMPLES)
+#        shell('utils/evaluate_cell_mixing.py --names {names} {input.truth} {input.sv_calls} > {output.tsv} 2> {log}')