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Commit 30e027ae authored by Tobias Marschall's avatar Tobias Marschall
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Change min_whitelist_interval_size to 100000 to exclude more known SVs from blacklist

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......@@ -455,7 +455,7 @@ rule merge_blacklist_bins:
"log/merge_blacklist_bins/{window}.log"
shell:
"""
utils/merge-blacklist.py --merge_distance 500000 {input.norm} --whitelist {input.whitelist} --min_whitelist_interval_size 400000 > {output.merged} 2> {log}
utils/merge-blacklist.py --merge_distance 500000 {input.norm} --whitelist {input.whitelist} --min_whitelist_interval_size 100000 > {output.merged} 2> {log}
"""
rule normalize_counts:
......
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