Initial commit (3f0dc28e) · Commits · Thomas Weber / Mosaicatcher Update · GitLab

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3f0dc28e

Commit 3f0dc28e authored 2 years ago by Thomas Weber

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Initial commit

Handle of multi samples in the same folder now
Change the way to retrieve the selected cell list

parent 673d7481

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Changes 9

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README.md 22 additions, 11 deletions

README.md
workflow/.conda/environments.txt 1 addition, 7 deletions

workflow/.conda/environments.txt
workflow/Snakefile 52 additions, 48 deletions

workflow/Snakefile
workflow/rules/count.smk 2 additions, 2 deletions

workflow/rules/count.smk
workflow/rules/examples.smk 3 additions, 2 deletions

workflow/rules/examples.smk
workflow/rules/haplotagging.smk 3 additions, 2 deletions

workflow/rules/haplotagging.smk
workflow/rules/regenotyping.smk 2 additions, 1 deletion

workflow/rules/regenotyping.smk
workflow/rules/segmentation.smk 2 additions, 1 deletion

workflow/rules/segmentation.smk
workflow/rules/stats.smk 1 addition, 1 deletion

workflow/rules/stats.smk

with 88 additions and 75 deletions

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