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Commit f594238f authored by Tobias Marschall's avatar Tobias Marschall
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Cleanup wrt requested parameter combinations

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...@@ -33,38 +33,16 @@ import os.path ...@@ -33,38 +33,16 @@ import os.path
METHODS = [ METHODS = [
#"simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0_regfactor6_filterFALSE",
"simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0.005_regfactor6_filterFALSE", "simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0.005_regfactor6_filterFALSE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0.01_regfactor6_filterFALSE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0.02_regfactor6_filterFALSE",
"simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0.03_regfactor6_filterFALSE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0.04_regfactor6_filterFALSE",
"simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0.05_regfactor6_filterFALSE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsTRUE_gtcutoff0_regfactor6_filterFALSE",
"simpleCalls_llr4_poppriorsTRUE_haplotagsTRUE_gtcutoff0.005_regfactor6_filterFALSE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsTRUE_gtcutoff0.01_regfactor6_filterFALSE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsTRUE_gtcutoff0.02_regfactor6_filterFALSE",
"simpleCalls_llr4_poppriorsTRUE_haplotagsTRUE_gtcutoff0.03_regfactor6_filterFALSE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsTRUE_gtcutoff0.04_regfactor6_filterFALSE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsTRUE_gtcutoff0.05_regfactor6_filterFALSE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0_regfactor6_filterTRUE",
"simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0.005_regfactor6_filterTRUE", "simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0.005_regfactor6_filterTRUE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0.01_regfactor6_filterTRUE", "simpleCalls_llr4_poppriorsTRUE_haplotagsTRUE_gtcutoff0.005_regfactor6_filterFALSE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0.02_regfactor6_filterTRUE",
"simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0.03_regfactor6_filterTRUE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0.04_regfactor6_filterTRUE",
"simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0.05_regfactor6_filterTRUE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsTRUE_gtcutoff0_regfactor6_filterTRUE",
"simpleCalls_llr4_poppriorsTRUE_haplotagsTRUE_gtcutoff0.005_regfactor6_filterTRUE", "simpleCalls_llr4_poppriorsTRUE_haplotagsTRUE_gtcutoff0.005_regfactor6_filterTRUE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsTRUE_gtcutoff0.01_regfactor6_filterTRUE", "simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0.05_regfactor6_filterFALSE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsTRUE_gtcutoff0.02_regfactor6_filterTRUE", "simpleCalls_llr4_poppriorsTRUE_haplotagsFALSE_gtcutoff0.05_regfactor6_filterTRUE",
"simpleCalls_llr4_poppriorsTRUE_haplotagsTRUE_gtcutoff0.03_regfactor6_filterTRUE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsTRUE_gtcutoff0.04_regfactor6_filterTRUE",
#"simpleCalls_llr4_poppriorsTRUE_haplotagsTRUE_gtcutoff0.05_regfactor6_filterTRUE",
] ]
BPDENS = [ BPDENS = [
"selected_j{}_s{}_scedist{}".format(joint, single, scedist) for joint in [0.1] for single in [0.5] for scedist in [5,20] "selected_j{}_s{}_scedist{}".format(joint, single, scedist) for joint in [0.1] for single in [0.5] for scedist in [20]
] ]
singularity: "docker://smei/mosaicatcher-pipeline:v0.1" singularity: "docker://smei/mosaicatcher-pipeline:v0.1"
......
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