Commits · 07479b7007b5e0feb92e2fbe3ff2b1f580370513 · Thomas Weber / Mosaicatcher Update

Dec 04, 2017
- removed class_dir & class_script params · 07479b70
  maryamghr authored 7 years ago
  
  07479b70
- added Maryam to the pipeline · 29767967
  daewoooo authored 7 years ago
  
  29767967
Nov 17, 2017
- dirty hack to remove chrX and chrY · e9e7281c
  Sascha Meiers authored 7 years ago
  
  e9e7281c
Nov 16, 2017
- added gitignore · 2398f57b
  Sascha Meiers authored 7 years ago
  
  2398f57b
- StrandPhaser config file is now dynamically generated · 01149e62
  Sascha Meiers authored 7 years ago
  
  01149e62
- Integrated Strandphaser into Snakemake pipeline. However, Strandphaser still throws an error · bcd95dd8
  Sascha Meiers authored 7 years ago
  
  bcd95dd8
Nov 14, 2017
- Added StrandPhaseR pipeline · 044fd3d7
  daewoooo authored 7 years ago
  
  044fd3d7
Oct 30, 2017
- Prepared rules to run SV classification tool, convert its output and plot it · 47125871
  Sascha Meiers authored 7 years ago
  
  47125871
Oct 27, 2017
- Integrate SV classification into pipeline. There are still errors in the SV classification script · 8aa711c6
  Sascha Meiers authored 7 years ago
  
  8aa711c6
Oct 26, 2017
- Fixed more fatal typos. gotta catch 'em all · c29ad663
  Sascha Meiers authored 7 years ago
  
  c29ad663
- Fixed another fatal type · a867aae2
  Sascha Meiers authored 7 years ago
  
  a867aae2
- Added variable-width bins in two window sizes · e25253ae
  Sascha Meiers authored 7 years ago
  
  e25253ae
- Fixed fatal type · 04c66cdb
  Sascha Meiers authored 7 years ago
  
  04c66cdb
- Fix for prev. commit · 0044adb9
  Sascha Meiers authored 7 years ago
  
  0044adb9
- Prepared the pipeline to include phased strand-states. The phasing pipeline... · 75da0fbe
  Sascha Meiers authored 7 years ago
  
  Prepared the pipeline to include phased strand-states. The phasing pipeline will be added later on. ALso, cleaned up the Snakefile.
  75da0fbe
- Added Strand-Phaser as dependency · 1e876952
  Sascha Meiers authored 7 years ago
  
  1e876952
- new step in the pipeline to prepare input files for calculation of SV propabilities · 216dbac5
  Sascha Meiers authored 7 years ago
  
  216dbac5
- Initial pipeline that does part of the job · 7eb5f6b1
  Sascha Meiers authored 7 years ago
  
  7eb5f6b1
Oct 25, 2017
- under construction note · e980a793
  Sascha Meiers authored 7 years ago
  
  e980a793
- Initial commit · a200ace9
  Sascha Meiers authored 7 years ago
  
  a200ace9