Commits · 18374424bdc5c824fdf3233e5a7b32a465380ecf · Thomas Weber / Mosaicatcher Update

May 22, 2018
- adding new SCE classification --> Need to re-install MosaiCatcher C++ code! · 18374424
  Sascha Meiers authored 6 years ago
  
  18374424
May 20, 2018
- Make a check whether strand states are infact disjoint · bec9a9e6
  Sascha Meiers authored 6 years ago
  
  bec9a9e6
May 19, 2018
- Log output of mosaiClassifier to file · 5d13c900
  Tobias Marschall authored 6 years ago
  
  5d13c900
May 18, 2018
- added more segmentation desities · 042b5afa
  Sascha Meiers authored 6 years ago
  
  042b5afa
- Changed the density of segmentation · 54c2cd67
  Sascha Meiers authored 6 years ago
  
  54c2cd67
- changed color of complex events · 044f0895
  Sascha Meiers authored 6 years ago
  
  044f0895
- Fixing small issue with the priors --> bi-alllelic classification should work now · 8afe95cb
  Sascha Meiers authored 6 years ago
  
  8afe95cb
- Make the post processing before calling SVs · d0fea184
  Sascha Meiers authored 6 years ago
  
  d0fea184
- added rules for biallelic caller · 72a01564
  Sascha Meiers authored 6 years ago
  
  72a01564
- Merge branch 'mosaiClassifier' of... · 4b866162
  Sascha Meiers authored 6 years ago
  
  Merge branch 'mosaiClassifier' of https://github.com/friendsofstrandseq/pipeline into mosaiClassifier
  4b866162
- Made PRIORS an argument to post processing. also edited output messages · 5e668cb1
  Sascha Meiers authored 6 years ago
  
  5e668cb1
- minor change · 0b3c03b3
  Sascha Meiers authored 6 years ago
  
  0b3c03b3
- Merge branch 'mosaiClassifier' of... · 44899189
  maryamghr authored 6 years ago
  
  Merge branch 'mosaiClassifier' of https://github.com/friendsofstrandseq/pipeline into mosaiClassifier
  44899189
- added the option for biallelic sv calling · a562fc94
  maryamghr authored 6 years ago
  
  a562fc94
- minor change · 8bef2f32
  Sascha Meiers authored 6 years ago
  
  8bef2f32
- Added check of input data · 4c95ce49
  Sascha Meiers authored 6 years ago
  
  4c95ce49
- new colors for background · 63fb96e2
  Sascha Meiers authored 6 years ago
  
  63fb96e2
- Added automatic decision for the haplotypeMode · e4100bdb
  Sascha Meiers authored 6 years ago
  
  e4100bdb
- Merge branch 'mosaiClassifier' of... · 15bce258
  Sascha Meiers authored 6 years ago
  
  Merge branch 'mosaiClassifier' of https://github.com/friendsofstrandseq/pipeline into mosaiClassifier
  15bce258
- set likelihood of exceptional segments to uniform · 5a4cce4a
  maryamghr authored 6 years ago
  
  5a4cce4a
- Try ranking with the `random` method which should never resolve ties in a way... · ba49dbac
  Sascha Meiers authored 6 years ago
  
  Try ranking with the `random` method which should never resolve ties in a way that they end up with the same rank
  ba49dbac
- set a slightly lower prior for inv-dup · dd3fd30b
  maryamghr authored 6 years ago
  
  dd3fd30b
- added inverted duplication case · afa4beb0
  maryamghr authored 6 years ago
  
  afa4beb0
- fixed the bug in creating repetitive columns · 9879f42d
  maryamghr authored 6 years ago
  
  9879f42d
- Merge branch 'mosaiClassifier' of... · fbc9b874
  Sascha Meiers authored 6 years ago
  
  Merge branch 'mosaiClassifier' of https://github.com/friendsofstrandseq/pipeline into mosaiClassifier
  fbc9b874
- Adding a helper function to inspect NB distributions · 14db2805
  Sascha Meiers authored 6 years ago
  
  14db2805
- Merge branch 'mosaiClassifier' of... · 6888de89
  maryamghr authored 6 years ago
  
  Merge branch 'mosaiClassifier' of https://github.com/friendsofstrandseq/pipeline into mosaiClassifier
  6888de89
- fixed a bug · f5f537ff
  maryamghr authored 6 years ago
  
  f5f537ff
- undone the last change · fec48471
  maryamghr authored 6 years ago
  
  Unverified
  
  fec48471
- added post processing step · 1e7b0acd
  maryamghr authored 6 years ago
  
  Unverified
  
  1e7b0acd
May 17, 2018
- Quick changes to allow plotting of SV calls - new rule for simulated variants · 818dbe3b
  Sascha Meiers authored 6 years ago
  
  818dbe3b
- Fixed minor issue · 5cd840f2
  Sascha Meiers authored 6 years ago
  
  5cd840f2
- Renamed file · 94a4898d
  Sascha Meiers authored 6 years ago
  
  94a4898d
- Making a simple SV caller · 12efaf98
  Sascha Meiers authored 6 years ago
  
  12efaf98
- return the probs table in post processing function · 722f8a76
  maryamghr authored 6 years ago
  
  722f8a76
- fixed a small bug · 69aaa48b
  maryamghr authored 6 years ago
  
  69aaa48b
- Preparing caller based on the new NB probs · 5c19a067
  Sascha Meiers authored 6 years ago
  
  5c19a067
- Removed unneccessary dependency · 458d9b93
  Sascha Meiers authored 6 years ago
  
  458d9b93
- Merge branch 'mosaiClassifier' of... · a2b63283
  Sascha Meiers authored 6 years ago
  
  Merge branch 'mosaiClassifier' of https://github.com/friendsofstrandseq/pipeline into mosaiClassifier
  a2b63283
- replaced `from` and `to` by `start` and `end` · 4cfa3921
  Sascha Meiers authored 6 years ago
  
  4cfa3921